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BaseInfo

ncRNA ID	novel_zma_miR6203
Species	Zea mays
Class	miRNA
Genome position	Chr4:138656414-138656566 [-]
Reference genome	RefGen_v4
Source	SRR2647385;SRR2647467
Length	24
Mature sequence(if miRNA)	130 - GUUAUUCUCGAUCCAUGUGGAUUG - 153
Stem-loop(if miRNA)	---G UA                     A  -AU    - A   AAUCG         --U  A     GUA    GGA  G     U  UUCUCGAUCCAUGUGGAUUGA GU   AUUG G CGG     AGAUCCAUG   GG UUGAA   UAUU   CG A     |  ||||||||||||||||||||| ||   |||| | |||     |||||||||   || |||||   ||||   ||     A  GAGAGUUAGGUACACCUAAUU CA   UAAC C GCC     UUUAGGUAU   UC GAUUU   GUAG   GC A GCCA GC                     -  CUC    U A   --AAA         UGU  A     -AG    --A  U
Stem-loop sequence	GUUAUUCUCGAUCCAUGUGGAUUGAAGUAUAUUGGACGGAAUCGAGAUCCAUGUGGAUUGAAGUAUAUUGGACGGAAUCGAGAUGGAUUUAGACUUGUUAUGGAUUUAAACCGACUCAAUCUCACUUAAUCCACAUGGAUUGAGAGCGAACCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403242.1	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   |||||||||||||||||||||||| targets:134   CAAUCCACAUGGAUCGAGAAUAAC   157 Target Full Sequence	0.0	Sequence 1367 from Patent EP2074227	NA	coding protein	psRNATarget
JB163703.1	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   |||||||||||||||||||||||| targets:134   CAAUCCACAUGGAUCGAGAAUAAC   157 Target Full Sequence	0.0	Sequence 1367 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235372.1	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   |||||||||||||||||||||||| targets:134   CAAUCCACAUGGAUCGAGAAUAAC   157 Target Full Sequence	0.0	Sequence 1367 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020542404.1	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   ||||=||||||||||*|||||||| targets:1240   CAAUUCACAUGGAUCUAGAAUAAC   1263 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542405.1	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   ||||=||||||||||*|||||||| targets:1230   CAAUUCACAUGGAUCUAGAAUAAC   1253 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008657652.2	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   ||||=||||||||||*|||||||| targets:1162   CAAUUCACAUGGAUCUAGAAUAAC   1185 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008657650.2	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   ||||=||||||||||*|||||||| targets:1120   CAAUUCACAUGGAUCUAGAAUAAC   1143 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657651.2	ncRNA:24   GUUAGGUGUACCUAGCUCUUAUUG   1   ||||=||||||||||*|||||||| targets:1041   CAAUUCACAUGGAUCUAGAAUAAC   1064 Target Full Sequence	1.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X2, mRNA	NA	coding protein	psRNATarget