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BaseInfo

ncRNA ID	novel_zma_miR6196
Species	Zea mays
Class	miRNA
Genome position	Chr8:44494616-44494670 [+]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	24
Mature sequence(if miRNA)	1 - UUGGAUGUCUCUAACUAAUUUUAG - 24
Stem-loop(if miRNA)	--        -  CU       -        UUGGAUGU CU  AACUAAU UUUAGU   |||||||| ||  ||||||| |||||C   AACUUACG GA  UUGAUUA AAAUCA CA        C  UC       U
Stem-loop sequence	UUGGAUGUCUCUAACUAAUUUUAGUCACUAAAUAUUAGUUCUAGCGCAUUCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545045.1	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||||=||||||||||| targets:1987   CUAAAAUUAGUUGGAGACAUCCAA   2010 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU960564.1	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||||=||||||||||| targets:608   CUAAAAUUAGUUGGAGACAUCCAA   631 Target Full Sequence	1.5	Zea mays clone 226155 LSM7-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155261.2	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||||=||||||||||| targets:607   CUAAAAUUAGUUGGAGACAUCCAA   630 Target Full Sequence	1.5	Zea mays LSM7-like (LOC100282349), mRNA	NA	coding protein	psRNATarget
AY105691.1	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||||=||||||||||| targets:599   CUAAAAUUAGUUGGAGACAUCCAA   622 Target Full Sequence	1.5	Zea mays PCO088276 mRNA sequence	NA	coding protein	psRNATarget
LQ235137.1	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||||=||||||||||| targets:42   CUAAAAUUAGUUGGAGACAUCCAA   65 Target Full Sequence	1.5	Sequence 1132 from Patent EP2985353	NA	coding protein	psRNATarget
HI403007.1	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||||=||||||||||| targets:42   CUAAAAUUAGUUGGAGACAUCCAA   65 Target Full Sequence	1.5	Sequence 1132 from Patent EP2074227	NA	coding protein	psRNATarget
JB163468.1	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||||=||||||||||| targets:42   CUAAAAUUAGUUGGAGACAUCCAA   65 Target Full Sequence	1.5	Sequence 1132 from Patent EP2559767	NA	coding protein	psRNATarget
EU943162.1	ncRNA:24   GAUUUUAAUCAAUCUCUGUAGGUU   1   ||||||||||*||||||=|||||| targets:1611   CUAAAAUUAGCUAGAGAUAUCCAA   1634 Target Full Sequence	2.5	Zea mays clone 1574300 mRNA sequence	NA	coding protein	psRNATarget