Search result

BaseInfo

ncRNA ID	novel_zma_miR6178
Species	Zea mays
Class	miRNA
Genome position	Chr3:7839502-7839604 [+]
Reference genome	RefGen_v4
Source	SRR2647385;SRR2647388
Length	24
Mature sequence(if miRNA)	80 - GUAUCUAGAAGAGCCAAAAUGUCU - 103
Stem-loop(if miRNA)	--U                A     CA      AC           UCAAA    CAUUUUGGCUUUUCUA AUACA  GUUUUU  UAUGUAUCUAG     C    |||||||||||||||| |||||  ||||||  |||||||||||     C    GUAAAACCGAGAAGAU UAUGU  UAAAAA  AUACGUGGAUC     A UCU                C     AA      GC           UAUAU
Stem-loop sequence	UCAUUUUGGCUUUUCUAAAUACACAGUUUUUACUAUGUAUCUAGUCAAACCAUAUAUCUAGGUGCAUACGAAAAAUAAUGUAUCUAGAAGAGCCAAAAUGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT039099.1	ncRNA:24   UCUGUAAAACCGAGAAGAUCUAUG   1   ||||=||*|||||=|||||||||| targets:867   AGACGUUCUGGCUUUUCUAGAUAC   890 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0370L15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UCUGUAAAACCGAGAAGAUCUAUG   1   =|||=|*||||||=|||||||||| targets:1650   GGACGUCUUGGCUUUUCUAGAUAC   1673 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT087422.1	ncRNA:24   UCUG-UAAAACCGAGAAGAUCUAUG   1   ||*|-=||||||||=|||||||||| targets:120   AGUCUGUUUUGGCUUUUCUAGAUAC   144 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0068H06 mRNA, complete cds	NA	coding protein	psRNATarget
BT069751.2	ncRNA:24   UCUGUAAAACCGAGAAGAUCUAUG   1   |*|==||||*|||=|||||||||| targets:1370   AAAUGUUUUAGCUUUUCUAGAUAC   1393 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0275C09 mRNA, complete cds	NA	coding protein	psRNATarget
EU963627.1	ncRNA:24   UCUGUAAAACCGAGAAGAUCUAUG   1   ***==|||||*||=|||||||||| targets:944   UUCUGUUUUGACUUUUCUAGAUAC   967 Target Full Sequence	2.5	Zea mays clone 264931 heat shock protein DnaJ, N-terminal mRNA, complete cds	NA	coding protein	psRNATarget
DQ244408.1	ncRNA:24   UCUGUAAAACCGAGAAGAUCUAUG   1   ***==|||||*||=|||||||||| targets:998   UUCUGUUUUGACUUUUCUAGAUAC   1021 Target Full Sequence	2.5	Zea mays clone 7183 mRNA sequence	NA	coding protein	psRNATarget
NM_001143619.2	ncRNA:24   UCUGUAAAACCGAGAAGAUCUAUG   1   ***==|||||*||=|||||||||| targets:984   UUCUGUUUUGACUUUUCUAGAUAC   1007 Target Full Sequence	2.5	Zea mays heat shock protein DnaJ (LOC100217267), mRNA	NA	coding protein	psRNATarget
BT038243.1	ncRNA:24   UCUGUAAAACCGAGAAGAUCUAUG   1   ***==|||||*||=|||||||||| targets:984   UUCUGUUUUGACUUUUCUAGAUAC   1007 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0221B04 mRNA, complete cds	NA	coding protein	psRNATarget