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BaseInfo

ncRNA ID novel_zma_miR6173
Species Zea mays
Class miRNA
Genome position Chr3:16481936-16482048 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 1 - AGAUCUGUGUUGGGCAAUUCAACC - 24
Stem-loop(if miRNA) --     ---        UU       UU       AAG   GAAC      CACC      
  UUGAA   CCCAACAC  GGUCUUU  AUUGGCU   AGU    CUUUGG    UGUAUAA
  |||||   ||||||||  |||||||  |||||||   |||    ||||||    ||||||C
  AACUU   GGGUUGUG  CUAGAAA  UGAUUGA   UCA    GAGAUC    ACAUAUU
CC     AAC        -U       CC       ---   -AAC      ----      
Stem-loop sequence UUGAACCCAACACUUGGUCUUUUUAUUGGCUAAGAGUGAACCUUUGGCACCUGUAUAACUUAUACACUAGAGCAAACUAGUUAGUCCAAAGAUCUGUGUUGGGCAAUUCAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948808.1
ncRNA:24   CCAACUUAACGGGUUGUGUCUAGA   1
  |||||||||||||||||||*||||
targets:147   GGUUGAAUUGCCCAACACAAAUCU   170

1.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget