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BaseInfo

ncRNA ID	novel_zma_miR6149
Species	Zea mays
Class	miRNA
Genome position	Chr4:21620722-21620934 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647387
Length	24
Mature sequence(if miRNA)	190 - UCUACAUAUAAUAUCAUGACAUGU - 213
Stem-loop(if miRNA)	--            C                                                                            A A    UA   C     AUGUCAUGAUAU AUAUGUAGAGGUUGUGAUAAAAAUUUGAGAAUGUUUCGAGAAAGUUGUGACGCACUAUGUGUGGAAACCUAAGAGA C ACAU  GAA UCU   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||| ||A   UACAGUACUAUA UAUACAUCUCCAACACUAUUUUUAAACUCUUACAAAGCUCUUUCAACACUGUGUGAUACAUAUCUUUGGAUUCUCU G UGUG  CUU AGU UG            A                                                                            A G    UA   U
Stem-loop sequence	AUGUCAUGAUAUCAUAUGUAGAGGUUGUGAUAAAAAUUUGAGAAUGUUUCGAGAAAGUUGUGACGCACUAUGUGUGGAAACCUAAGAGAACAACAUUAGAACUCUAUGAUUUCAUGUGUGGAUCUCUUAGGUUUCUAUACAUAGUGUGUCACAACUUUCUCGAAACAUUCUCAAAUUUUUAUCACAACCUCUACAUAUAAUAUCAUGACAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551149.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   |*||||||||=|||*||||||||| targets:280   AAAUGUCAUGGUAUCAUAUGUAGA   303 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109945307 (LOC109945307), mRNA	NA	coding protein	psRNATarget
EZ077238.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ==||*|=||||||||||=|||||| targets:11   GUAUAUUAUGAUAUUAUGUGUAGA   34 Target Full Sequence	2.5	TSA: Zea mays contig12875, mRNA sequence	NA	coding protein	psRNATarget
BT067395.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ||||**=||*|||||||||||||| targets:2070   ACAUAAUAUUAUAUUAUAUGUAGA   2093 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0035G13 mRNA, complete cds	NA	coding protein	psRNATarget
BT063516.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ||||**=||*|||||||||||||| targets:2017   ACAUAAUAUUAUAUUAUAUGUAGA   2040 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0071M22 mRNA, complete cds	NA	coding protein	psRNATarget
EU973055.1	ncRNA:24   UGUACAGUACUAUAAUAUACAUCU   1   ||||**=||*|||||||||||||| targets:469   ACAUAAUAUUAUAUUAUAUGUAGA   492 Target Full Sequence	3.0	Zea mays clone 392618 mRNA sequence	NA	coding protein	psRNATarget