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BaseInfo

ncRNA ID	novel_zma_miR6144
Species	Zea mays
Class	miRNA
Genome position	Chr10:4014306-4014376 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647387
Length	24
Mature sequence(if miRNA)	48 - CACAGAUCUUGGCGCCGAGGUGCA - 71
Stem-loop(if miRNA)	--UUG          U   -             G A      CUCGGUGCCA AGG CUGUGGCGCCAAG U A      |||||||||| ||| ||||||||||||| | C      GAGCCGCGGU UCU GACACCGUGGUUC G A ACGUG          -   A             G C
Stem-loop sequence	UUGCUCGGUGCCAUAGGCUGUGGCGCCAAGGUAACACGGCUUGGUGCCACAGAUCUUGGCGCCGAGGUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552215.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   ||=||||||*|||||||||||*|| targets:2   UGUACCUCGACGCCAAGAUCUAUG   25 Target Full Sequence	2.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA	NA	coding protein	psRNATarget
XM_008672912.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=|*||||||||||||||||||| targets:367   CCUAGCUCGGCGCCAAGAUCUGUG   390 Target Full Sequence	0.0	PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA	NA	coding protein	psRNATarget
XM_008652503.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=|*||||||||||||||||||| targets:400   CCUAGCUCGGCGCCAAGAUCUGUG   423 Target Full Sequence	0.0	PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA	NA	coding protein	psRNATarget
XM_008664820.2	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:11   CCUACCUCGGCGCCAAGAUCUAUG   34 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:56   CCUACCUCGGCGCCAAGAUCUAUG   79 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020548134.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:33   CCUACCUCGGCGCCAAGAUCUAUG   56 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:213   CCUACCUCGGCGCCAAGAUCUAUG   236 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:213   CCUACCUCGGCGCCAAGAUCUAUG   236 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:213   CCUACCUCGGCGCCAAGAUCUAUG   236 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:217   CCUACCUCGGCGCCAAGAUCUAUG   240 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:217   CCUACCUCGGCGCCAAGAUCUAUG   240 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:282   CCUACCUCGGCGCCAAGAUCUAUG   305 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   **=||||||||||||||||||*|| targets:989   CCUACCUCGGCGCCAAGAUCUAUG   1012 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
LQ238045.1	ncRNA:19   GAGCCGCGGUUCUAGACAC   1   ||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUG   19 Target Full Sequence	0.0	Sequence 4040 from Patent EP2985353	NA	coding protein	psRNATarget
JB166376.1	ncRNA:19   GAGCCGCGGUUCUAGACAC   1   ||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUG   19 Target Full Sequence	0.0	Sequence 4040 from Patent EP2559767	NA	coding protein	psRNATarget
HI405915.1	ncRNA:19   GAGCCGCGGUUCUAGACAC   1   ||||||||||||||||||| targets:1   CUCGGCGCCAAGAUCUGUG   19 Target Full Sequence	0.0	Sequence 4040 from Patent EP2074227	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   *|=|*||||||||||||||||*|| targets:143   GGUAGCUCGGCGCCAAGAUCUAUG   166 Target Full Sequence	1.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   *|=|*||||||||||||||||*|| targets:143   GGUAGCUCGGCGCCAAGAUCUAUG   166 Target Full Sequence	1.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   ACGUGGAGCCGCGGUUCUAGACAC   1   *|=|*||||||||||||||||*|| targets:143   GGUAGCUCGGCGCCAAGAUCUAUG   166 Target Full Sequence	1.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget