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BaseInfo

ncRNA ID	novel_zma_miR6142
Species	Zea mays
Class	miRNA
Genome position	Chr4:16114506-16114575 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647387;SRR2647390
Length	24
Mature sequence(if miRNA)	1 - GAUCCAUGGGGGAGAAAUUCCCUU - 24
Stem-loop(if miRNA)	--              A          CA     A   GAUCCAUGGGGGAG AAUUCCCUUG  AUUCA U   |||||||||||||| ||||||||||  |||||   CUAGGUACCCCCUC UUAGGGGAAC  UAAGU U CC              C          AA     U
Stem-loop sequence	GAUCCAUGGGGGAGAAAUUCCCUUGCAAUUCAAUUUUGAAUAACAAGGGGAUUCCUCCCCCAUGGAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235127.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||||||*|||||||||||||| targets:78   AAGGGAAUUACUCCCCCAUGGAUC   101 Target Full Sequence	1.0	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget
JB163458.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||||||*|||||||||||||| targets:78   AAGGGAAUUACUCCCCCAUGGAUC   101 Target Full Sequence	1.0	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
HI402997.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||||||*|||||||||||||| targets:78   AAGGGAAUUACUCCCCCAUGGAUC   101 Target Full Sequence	1.0	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||||||*|||||||||||||| targets:4478   AAGGGAAUUCCUCCCCCAUGGAUC   4501 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||||||*|||||||||||||| targets:4652   AAGGGAAUUCCUCCCCCAUGGAUC   4675 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552825.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||||||*|||||||||||||| targets:4743   AAGGGAAUUCCUCCCCCAUGGAUC   4766 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||=|||*|||||||||||||| targets:120   AAGGGGAUUCCUCCCCCAUGGAUC   143 Target Full Sequence	2.0	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
LQ241162.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||=|||*|||||||||||||* targets:48   AAGGGGAUUCCUCCCCCAUGGAUG   71 Target Full Sequence	3.0	Sequence 7157 from Patent EP2985353	NA	coding protein	psRNATarget
JB169493.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||=|||*|||||||||||||* targets:48   AAGGGGAUUCCUCCCCCAUGGAUG   71 Target Full Sequence	3.0	Sequence 7157 from Patent EP2559767	NA	coding protein	psRNATarget
HI409032.1	ncRNA:24   UUCCCUUAAAGAGGGGGUACCUAG   1   |||||=|||*|||||||||||||* targets:48   AAGGGGAUUCCUCCCCCAUGGAUG   71 Target Full Sequence	3.0	Sequence 7157 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008670762.2	ncRNA:24   UU-CC--CUUAAAGAGGGGGUACCUAG   1   ||-||--|||||*||||=||||||||| targets:2247   AAUGGUUGAAUUGCUCCUCCAUGGAUC   2273 Target Full Sequence	2.5	PREDICTED: Zea mays putative E3 ubiquitin-protein ligase LIN-2 (LOC103646023), mRNA	NA	coding protein	psRNATarget