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BaseInfo

ncRNA ID	novel_zma_miR6137
Species	Zea mays
Class	miRNA
Genome position	Chr4:154127231-154127326 [+]
Reference genome	RefGen_v4
Source	SRR2647343
Length	24
Mature sequence(if miRNA)	73 - AUUCCCCUCAAUCCAUAUGGAUUG - 96
Stem-loop(if miRNA)	--             A       UUGAUACGG   G    A A   UG -   A   AUCCAUAUGGAUU GAGGGGA         AUU GGAG G UUU  A CUU C   ||||||||||||| |||||||         ||| |||| | |||  | |||   UAGGUAUACCUAA CUCCCCU         UAA UCUC C AAA  U GGG U GU             -       ---------   A    - C   GU A   A
Stem-loop sequence	AUCCAUAUGGAUUAGAGGGGAUUGAUACGGAUUGGGAGAGAUUUUGACUUACUAGGGAUUGAAACCCUCUAAAUUCCCCUCAAUCCAUAUGGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001348011.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||||||||||||||||||=|| targets:374   CAAUCCAUAUGGAUUGAGGGGGAU   397 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||||||||||||||||||=|| targets:713   CAAUCCAUAUGGAUUGAGGGGGAU   736 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||||||||||||||||||=|| targets:976   CAAUCCAUAUGGAUUGAGGGGGAU   999 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||||||||||||||||||=|| targets:1014   CAAUCCAUAUGGAUUGAGGGGGAU   1037 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||||||||||||||||||=|| targets:1559   CAAUCCAUAUGGAUUGAGGGGGAU   1582 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||||||||||||||||*| targets:906   CAAUCCAUAUGGAUUGAGGGGAUU   929 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
LQ237962.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGGAAU   45 Target Full Sequence	2.5	Sequence 3957 from Patent EP2985353	NA	coding protein	psRNATarget
JB166293.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGGAAU   45 Target Full Sequence	2.5	Sequence 3957 from Patent EP2559767	NA	coding protein	psRNATarget
HI405832.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||=|||||||||*||||| targets:22   CAAUCCAUGUGGAUUGAGUGGAAU   45 Target Full Sequence	2.5	Sequence 3957 from Patent EP2074227	NA	coding protein	psRNATarget
AY104367.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||=|||||||||*||||| targets:632   CAAUCCAUGUGGAUUGAGUGGAAU   655 Target Full Sequence	2.5	Zea mays PCO134486 mRNA sequence	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||=|||||||||*||||| targets:699   CAAUCCAUGUGGAUUGAGUGGAAU   722 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||=|||||||||*||||| targets:699   CAAUCCAUGUGGAUUGAGUGGAAU   722 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||=||||||||||||||||*| targets:767   CAAUCUAUAUGGAUUGAGGGGAUU   790 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||=||||||||||||||||*| targets:938   CAAUCUAUAUGGAUUGAGGGGAUU   961 Target Full Sequence	2.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||=|||||||||*||||| targets:942   CAAUCCAUGUGGAUUGAGUGGAAU   965 Target Full Sequence	2.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||||||||||*||||||||||=|| targets:230   CAAUCCAUAUAGAUUGAGGGGGAU   253 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   |||||||||||*|||||||||||* targets:196   CAAUCCAUAUGAAUUGAGGGGAAC   219 Target Full Sequence	2.5	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||=||=||||||||||||||||*| targets:818   CAGUCUAUAUGGAUUGAGGGGAUU   841 Target Full Sequence	2.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   GUUAGGUAUACCUAACUCCCCUUA   1   ||=||=||||||||||||||||*| targets:818   CAGUCUAUAUGGAUUGAGGGGAUU   841 Target Full Sequence	2.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget