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BaseInfo

ncRNA ID novel_zma_miR6133
Species Zea mays
Class miRNA
Genome position Chr3:85083830-85083920 [+]
Reference genome RefGen_v4
Source SRR2647343;SRR2647387
Length 24
Mature sequence(if miRNA) 1 - AGAACUAAACGGUUUAUUCCGGUU - 24
Stem-loop(if miRNA) --       AA  GU                  ----     U    U
  AGAACUA  CG  UUAUUCCGGUUUAAGUGU    GUUGC GCCU U
  |||||||  ||  ||||||||||||||||||    ||||| ||||
  UCUUGGU  GC  AAUAAGGUCGAAUUCACG    CAGCG UGGG A
CA       GA  UU                  GGUU     -    A
Stem-loop sequence AGAACUAAACGGUUUAUUCCGGUUUAAGUGUGUUGCUGCCUUUAAGGGUGCGACUUGGGCACUUAAGCUGGAAUAAUUCGAGUGGUUCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ080921.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:73   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   104

2.5 TSA: Zea mays contig16560, mRNA sequence NA coding protein psRNATarget
AY111600.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:54   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   85

2.5 Zea mays CL6826_3 mRNA sequence NA coding protein psRNATarget
BT018365.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:62   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   93

2.5 Zea mays clone EL01N0311E09.c mRNA sequence NA coding protein psRNATarget
EU946117.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:286   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   317

2.5 Zea mays clone 297359 mRNA sequence NA coding protein psRNATarget
BT019203.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:60   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   91

2.5 Zea mays clone Contig876.F mRNA sequence NA coding protein psRNATarget
EU952363.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:338   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   369

2.5 Zea mays clone 1278461 mRNA sequence NA coding protein psRNATarget
XM_008670222.2
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:2903   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   2934

2.5 PREDICTED: Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020547916.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:2903   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   2934

2.5 PREDICTED: Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), transcript variant X4, mRNA NA coding protein psRNATarget
NM_001176227.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:3000   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   3031

2.5 Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), mRNA NA coding protein psRNATarget
BT067679.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:3000   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   3031

2.5 Zea mays full-length cDNA clone ZM_BFc0122F08 mRNA, complete cds NA coding protein psRNATarget
XM_008670221.2
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:3007   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   3038

2.5 PREDICTED: Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547915.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:3007   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   3038

2.5 PREDICTED: Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547917.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:3016   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   3047

2.5 PREDICTED: Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547914.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:3045   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   3076

2.5 PREDICTED: Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547913.1
ncRNA:24   UUGG--------CCUUAUUUGGCAAAUCAAGA   1
  =|||--------|||||*||||||*|||||||
targets:3054   GACCUCGAGGAGGGAAUUAACCGUCUAGUUCU   3085

2.5 PREDICTED: Zea mays 2-oxoglutarate dehydrogenase E1 component (LOC100383579), transcript variant X1, mRNA NA coding protein psRNATarget
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