Search result

BaseInfo

ncRNA ID	novel_zma_miR6131
Species	Zea mays
Class	miRNA
Genome position	Chr3:74687460-74687572 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647386
Length	24
Mature sequence(if miRNA)	1 - GUGCUCAUUUUUACCCUUAGUCGU - 24
Stem-loop(if miRNA)	--                     C   C                      ---   UC   GUGCUCAUUUUUACCCUUAGU GUG UUUUUGCUCAGUUUUGCCCUUC   UGU  U   ||||||||||||||||||||| ||| ||||||||||||||||||||||   |||   CACGAGUAAAAAUGGGAAUCA CAC AAAAACGAGUCAAAACGGGAAG   ACG  A CA                     C   A                      CUC   AU
Stem-loop sequence	GUGCUCAUUUUUACCCUUAGUCGUGCUUUUUGCUCAGUUUUGCCCUUCUGUUCUAUAGCACUCGAAGGGCAAAACUGAGCAAAAAACACCACUAAGGGUAAAAAUGAGCACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061928.1	ncRNA:24   UGCUGAUUCCCAUUUUUACUCGUG   1   ||*||||||||||||||||||||| targets:553   ACAACUAAGGGUAAAAAUGAGCAC   576 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0198J17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679472.2	ncRNA:24   UGCUGAUUCCCAUUUUUACUCGUG   1   ||||||||||||||||||*||||| targets:2663   ACGACUAAGGGUAAAAAUAAGCAC   2686 Target Full Sequence	1.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679473.2	ncRNA:24   UGCUGAUUCCCAUUUUUACUCGUG   1   ||||||||||||||||||*||||| targets:2866   ACGACUAAGGGUAAAAAUAAGCAC   2889 Target Full Sequence	1.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT088229.1	ncRNA:24   UGCUGAUUCCCAUUUUUACUCGUG   1   |=|||||||||||||||||||*|* targets:1443   AUGACUAAGGGUAAAAAUGAGGAA   1466 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0083G18 mRNA, complete cds	NA	coding protein	psRNATarget
BT062332.1	ncRNA:24   UGCUGAUUCCCAUUUUUACUCGUG   1   |=|||||||||||||||||||*|* targets:1761   AUGACUAAGGGUAAAAAUGAGGAA   1784 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0282G11 mRNA, complete cds	NA	coding protein	psRNATarget
BT055615.2	ncRNA:24   UGCUGAUUCCCAUUUUUACUCGUG   1   ||||||||*|||||||*||||||| targets:108   ACGACUAAAGGUAAAACUGAGCAC   131 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0072O22 mRNA, complete cds	NA	coding protein	psRNATarget