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BaseInfo

ncRNA ID	novel_zma_miR6121
Species	Zea mays
Class	miRNA
Genome position	Chr3:178055001-178055060 [-]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647387;SRR2647467;SRR4237221;SRR4237224;SRR4237227
Length	23
Mature sequence(if miRNA)	38 - AUAUGAGAUCUGCUGGAGAUAGC - 60
Stem-loop(if miRNA)	--AUA    A  -   -       --A  CUU      UGAG UC UGC UGGAGAU   GC   A      |||| || ||| |||||||   ||   G      ACUU AG ACG ACUUUUA   CG   C ACUAC    -  C   U       GAA  AUA
Stem-loop sequence	AUAUGAGAUCUGCUGGAGAUAGCCUUAGCAUAGCAAGAUUUUCAUGCACGAUUCACAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY105030.1	ncRNA:23   CGAUAGAGGUCGUCUAGAGUAUA   1   |||||||||||||||||||*||| targets:732   GCUAUCUCCAGCAGAUCUCCUAU   754 Target Full Sequence	1.5	Zea mays PCO147423 mRNA sequence	NA	coding protein	psRNATarget
AY093418.1	ncRNA:23   CGAUAGAGGUCGUCUAGAGUAUA   1   |||||||||||||||||||*||| targets:1373   GCUAUCUCCAGCAGAUCUCCUAU   1395 Target Full Sequence	1.5	Zea mays nucleosome/chromatin assembly factor 104 (nfc104) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111718.1	ncRNA:23   CGAUAGAGGUCGUCUAGAGUAUA   1   |||||||||||||||||||*||| targets:1373   GCUAUCUCCAGCAGAUCUCCUAU   1395 Target Full Sequence	1.5	Zea mays nucleosome/chromatin assembly factor 104 (nfc104a), mRNA	NA	coding protein	psRNATarget
EU961955.1	ncRNA:23   CGAUAGAGGUCGUCUAGAGUAUA   1   |||||||||||||||||||*||| targets:1377   GCUAUCUCCAGCAGAUCUCCUAU   1399 Target Full Sequence	1.5	Zea mays clone 239274 WD-40 repeat protein MSI1 mRNA, complete cds	NA	coding protein	psRNATarget
BT042677.1	ncRNA:23   CGAUAGAGGUCGUCUAGAGUAUA   1   |||||||||||||||||||*||| targets:1452   GCUAUCUCCAGCAGAUCUCCUAU   1474 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0006P10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653625.2	ncRNA:23   CGAUAGAGGUCGUCUAGAGUAUA   1   |||||||||||||||||||*||| targets:2562   GCUAUCUCCAGCAGAUCUCCUAU   2584 Target Full Sequence	1.5	PREDICTED: Zea mays nucleosome/chromatin assembly factor 104 (nfc104a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ094230.1	ncRNA:23   CGAUAGAGGUCGUCUAGAGUAUA   1   *=|=|=||=*||||||||||||| targets:9   CUUGUUUCUUGCAGAUCUCAUAU   31 Target Full Sequence	3.0	TSA: Zea mays contig29882, mRNA sequence	NA	coding protein	psRNATarget