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BaseInfo

ncRNA ID	novel_zma_miR6120
Species	Zea mays
Class	miRNA
Genome position	Chr3:188013852-188013915 [-]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647467
Length	24
Mature sequence(if miRNA)	41 - AUAGAUCUUGGCGCCGAGGUAGCC - 64
Stem-loop(if miRNA)	--                      ----    CG   AUAGAUCUUGGCGCCGAGGUAG    CCGG  U   ||||||||||||||||||||||    ||||   UAUCUAGAACCGCGGCUCCAUC    GGCC  U AG                      CGCG    AG
Stem-loop sequence	AUAGAUCUUGGCGCCGAGGUAGCCGGCGUUGACCGGGCGCCUACCUCGGCGCCAAGAUCUAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008664820.2	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:10   GCCUACCUCGGCGCCAAGAUCUAU   33 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:55   GCCUACCUCGGCGCCAAGAUCUAU   78 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020548134.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:32   GCCUACCUCGGCGCCAAGAUCUAU   55 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:212   GCCUACCUCGGCGCCAAGAUCUAU   235 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:212   GCCUACCUCGGCGCCAAGAUCUAU   235 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:212   GCCUACCUCGGCGCCAAGAUCUAU   235 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:216   GCCUACCUCGGCGCCAAGAUCUAU   239 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:216   GCCUACCUCGGCGCCAAGAUCUAU   239 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:281   GCCUACCUCGGCGCCAAGAUCUAU   304 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |*|||||||||||||||||||||| targets:988   GCCUACCUCGGCGCCAAGAUCUAU   1011 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   **|||||||||||||||||||||* targets:54   ACCUACCUCGGCGCCAAGAUCUAC   77 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   CCG---AUGGAGCCGCGGUUCUAGAUA   1   |||---||*|||||||||||||||||| targets:139   GGCAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	1.0	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   CCG---AUGGAGCCGCGGUUCUAGAUA   1   |||---||*|||||||||||||||||| targets:139   GGCAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	1.0	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   CCG---AUGGAGCCGCGGUUCUAGAUA   1   |||---||*|||||||||||||||||| targets:139   GGCAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	1.0	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008672912.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   **|||*||||||||||||||||=| targets:366   UCCUAGCUCGGCGCCAAGAUCUGU   389 Target Full Sequence	2.5	PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA	NA	coding protein	psRNATarget
XM_008652503.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   **|||*||||||||||||||||=| targets:399   UCCUAGCUCGGCGCCAAGAUCUGU   422 Target Full Sequence	2.5	PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA	NA	coding protein	psRNATarget
XM_020552215.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   ***|||||||*||||||||||||| targets:1   AUGUACCUCGACGCCAAGAUCUAU   24 Target Full Sequence	1.0	PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA	NA	coding protein	psRNATarget
XM_020540041.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   ***||||||||||||||||||*|| targets:1021   AAAUACCUCGGCGCCAAGAUCCAU   1044 Target Full Sequence	1.5	PREDICTED: Zea mays spidroin-1-like (LOC109940499), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   CCG-A--UGGAGCCGCGGUUCUAGAUA   1   |||-|--|*|||||||||||||||||| targets:1831   GGCAUCGAGCUCGGCGCCAAGAUCUAU   1857 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   CCG-A--UGGAGCCGCGGUUCUAGAUA   1   |||-|--|*|||||||||||||||||| targets:1856   GGCAUCGAGCUCGGCGCCAAGAUCUAU   1882 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   CCG-A--UGGAGCCGCGGUUCUAGAUA   1   |||-|--|*|||||||||||||||||| targets:1863   GGCAUCGAGCUCGGCGCCAAGAUCUAU   1889 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU970717.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |||*=||||||||*|||||||||* targets:434   GGCGGCCUCGGCGGCAAGAUCUAC   457 Target Full Sequence	2.5	Zea mays clone 349399 mRNA sequence	NA	coding protein	psRNATarget
BT042412.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |||*=||||||||*|||||||||* targets:514   GGCGGCCUCGGCGGCAAGAUCUAC   537 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224B12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001305854.1	ncRNA:24   CCGAUGGAGCCGCGGUUCUAGAUA   1   |||*=||||||||*|||||||||* targets:519   GGCGGCCUCGGCGGCAAGAUCUAC   542 Target Full Sequence	2.5	Zea mays male gametophyte-specific 2 (LOC542245), mRNA	NA	coding protein	psRNATarget