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BaseInfo

ncRNA ID	novel_zma_miR6117
Species	Zea mays
Class	miRNA
Genome position	Chr3:211643068-211643157 [+]
Reference genome	RefGen_v4
Source	SRR2647343
Length	24
Mature sequence(if miRNA)	67 - AGAAUCCCUUGGGAAAACGGUGUU - 90
Stem-loop(if miRNA)	--                            C    A     UUAG   CACCGUUUUCCCAAGGGAUUCUAAUUUU CCAA GGAAA    U   |||||||||||||||||||||||||||| |||| |||||   GUGGCAAAAGGGUUCCCUAAGAUUAAAA GGUU CCUUU    U UU                            U    C     UUAC
Stem-loop sequence	CACCGUUUUCCCAAGGGAUUCUAAUUUUCCCAAAGGAAAUUAGUUCAUUUUUCCCUUGGUAAAAUUAGAAUCCCUUGGGAAAACGGUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068291.1	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   ||||||*||||||||||||||||| targets:1169   AACACCAUUUUCCCAAGGGAUUCU   1192 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0098O13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665071.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3570   AACUCCAUUUUCCCGAGGGAUUCU   3593 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020545579.1	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3587   AACUCCAUUUUCCCGAGGGAUUCU   3610 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008665067.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3676   AACUCCAUUUUCCCGAGGGAUUCU   3699 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008665065.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3693   AACUCCAUUUUCCCGAGGGAUUCU   3716 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665068.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3702   AACUCCAUUUUCCCGAGGGAUUCU   3725 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008665064.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3719   AACUCCAUUUUCCCGAGGGAUUCU   3742 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665066.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3748   AACUCCAUUUUCCCGAGGGAUUCU   3771 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008665062.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3854   AACUCCAUUUUCCCGAGGGAUUCU   3877 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665063.2	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*||*|||||||=||||||||| targets:3880   AACUCCAUUUUCCCGAGGGAUUCU   3903 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU950786.1	ncRNA:24   UUGUGGCAAAAGGGUUCCCUAAGA   1   |||*=|*|||||||||||||||=| targets:300   AACCUCAUUUUCCCAAGGGAUUUU   323 Target Full Sequence	2.5	Zea mays clone 622889 mRNA sequence	NA	coding protein	psRNATarget