Search result

BaseInfo

ncRNA ID	novel_zma_miR6114
Species	Zea mays
Class	miRNA
Genome position	Chr3:171650547-171650713 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647389;SRR2647391
Length	24
Mature sequence(if miRNA)	1 - CCCUGUCUCAUCGAAUGUUUGAAC - 24
Stem-loop(if miRNA)	--CCCU   U              ACCUCCGUUCC      U        -  G     -UAAA    -       AGCCGAAGA       GUC CAUCGAAUGUUUGA           GGGUAU AAAUGUAG UC GAUUA     ACUA AUUUGUC         U       ||| ||||||||||||||           |||||| |||||||| || |||||     |||| |||||||       CAG GUAGUUUGCAAACU           CUCAUA UUUAUAUC GG UUGGU     UGAU UAAGCAG         U CGAGCC   U              GAAAAUUUAUC      C        U  G     UGACC    C       AGCAGAAAA
Stem-loop sequence	CCCUGUCUCAUCGAAUGUUUGAACCUCCGUUCCGGGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUGUCAGCCGAAGAUUAAAAGACGAGACGAAUCUAGUCCAGUUGGUUGGGUCUAUAUUUCAUACUCCUAUUUAAAAGUCAAACGUUUGAUGUGACCCGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ107977.1	ncRNA:24   CAAGUUUGUAAGCUACUCUGUCCC   1   ||||||||||||||||=||||||| targets:30   GUUCAAACAUUCGAUGGGACAGGG   53 Target Full Sequence	1.5	TSA: Zea mays contig43635, mRNA sequence	NA	coding protein	psRNATarget
EZ073045.1	ncRNA:24   CAAGUUUGUAAGCUACUCUGUCCC   1   **||||||||||||||*||||||| targets:4   ACUCAAACAUUCGAUGUGACAGGG   27 Target Full Sequence	1.5	TSA: Zea mays contig08682, mRNA sequence	NA	coding protein	psRNATarget
XM_008678814.2	ncRNA:19   UUGUAAGCUACUCUGUCCC   1   |||||||||||=||||||| targets:1   AACAUUCGAUGGGACAGGG   19 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939230 (LOC109939230), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678813.2	ncRNA:19   UUGUAAGCUACUCUGUCCC   1   |||||||||||=||||||| targets:1   AACAUUCGAUGGGACAGGG   19 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939230 (LOC109939230), transcript variant X1, mRNA	NA	coding protein	psRNATarget