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BaseInfo

ncRNA ID novel_zma_miR6109
Species Zea mays
Class miRNA
Genome position Chr2:8979660-8979726 [-]
Reference genome RefGen_v4
Source SRR2647343;SRR2647388;SRR1583943
Length 24
Mature sequence(if miRNA) 44 - AAAAACCGCUGGUAAACCGUUACC - 67
Stem-loop(if miRNA) --        C           -U    CUC  U
  AAAAACCG UGGUAAACCGU  ACCG   CC G
  |||||||| |||||||||||  ||||   ||
  UUUUUGGC GCCAUUUGGUA  UGGC   GG A
AG        C           UU    UUU  C
Stem-loop sequence AAAAACCGCUGGUAAACCGUUACCGCUCCCUGACGGUUUCGGUUUAUGGUUUACCGCCGGUUUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950046.1
ncRNA:24   CCAUUGCCAAAUGGUCGCCAAAAA   1
  **|==|||||||||||=|||||||
targets:722   AAUGGCGGUUUACCAGUGGUUUUU   745

1.5 Zea mays clone 459172 mRNA sequence NA coding protein psRNATarget
EZ049055.1
ncRNA:23   CAUUGCCAAAUGGUCGCCAAAAA   1
  **||||||||||||||||||||*
targets:1   AAAACGGUUUACCAGCGGUUUUC   23

1.0 TSA: Zea mays contig50173, mRNA sequence NA coding protein psRNATarget