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BaseInfo

ncRNA ID	novel_zma_miR6105
Species	Zea mays
Class	miRNA
Genome position	Chr10:145592404-145592473 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647391
Length	24
Mature sequence(if miRNA)	1 - GGAUCCAUGGGGAGAAAUCCCCUU - 24
Stem-loop(if miRNA)	--              A    C    ACA     A   GGAUCCAUGGGGAG AAUC CCUU   AUUUA U   |||||||||||||| |||| ||||   |||||   CCUAGGUAUCUCUC UUAG GGAA   UAAGU U CU              C    A    CAA     U
Stem-loop sequence	GGAUCCAUGGGGAGAAAUCCCCUUACAAUUUAAUUUUGAAUAACAAGGAGAUUCCUCUCUAUGGAUCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239042.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*|||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUCC   77 Target Full Sequence	1.0	Sequence 5037 from Patent EP2985353	NA	coding protein	psRNATarget
JB167373.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*|||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUCC   77 Target Full Sequence	1.0	Sequence 5037 from Patent EP2559767	NA	coding protein	psRNATarget
HI406912.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*|||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUCC   77 Target Full Sequence	1.0	Sequence 5037 from Patent EP2074227	NA	coding protein	psRNATarget
JB167194.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*=||||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUCC   85 Target Full Sequence	2.0	Sequence 4858 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238863.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*=||||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUCC   85 Target Full Sequence	2.0	Sequence 4858 from Patent EP2985353	NA	coding protein	psRNATarget
HI406733.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*=||||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUCC   85 Target Full Sequence	2.0	Sequence 4858 from Patent EP2074227	NA	coding protein	psRNATarget
EU948260.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*=||||||||||||| targets:393   AAGGGGAUUCUUCCCCAUGGAUCC   416 Target Full Sequence	2.0	Zea mays clone 371984 mRNA sequence	NA	coding protein	psRNATarget
BT068562.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   =||||||||*|||||||||||||| targets:1046   GAGGGGAUUCCUCCCCAUGGAUCC   1069 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667073.2	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*||||||||||||=| targets:3360   AAGGGGAUUCCUCCCCAUGGAUUC   3383 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667075.2	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*||||||||||||=| targets:3376   AAGGGGAUUCCUCCCCAUGGAUUC   3399 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667074.2	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*||||||||||||=| targets:3380   AAGGGGAUUCCUCCCCAUGGAUUC   3403 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163789.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*||||||||*||||| targets:53   AAGGGGAUUCCUCCCCAUAGAUCC   76 Target Full Sequence	2.5	Sequence 1453 from Patent EP2559767	NA	coding protein	psRNATarget
HI403328.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*||||||||*||||| targets:53   AAGGGGAUUCCUCCCCAUAGAUCC   76 Target Full Sequence	2.5	Sequence 1453 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235458.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||||||*||||||||*||||| targets:53   AAGGGGAUUCCUCCCCAUAGAUCC   76 Target Full Sequence	2.5	Sequence 1453 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235077.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||*|||*|||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUCC   106 Target Full Sequence	2.0	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
HI402947.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||*|||*|||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUCC   106 Target Full Sequence	2.0	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
JB163408.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||||*|||*|||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUCC   106 Target Full Sequence	2.0	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
JB170710.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||**||||*|||||||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUCC   71 Target Full Sequence	1.0	Sequence 8374 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242379.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||**||||*|||||||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUCC   71 Target Full Sequence	1.0	Sequence 8374 from Patent EP2985353	NA	coding protein	psRNATarget
HI410249.1	ncRNA:24   UUCCCCUAAAGAGGGGUACCUAGG   1   |||**||||*|||||||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUCC   71 Target Full Sequence	1.0	Sequence 8374 from Patent EP2074227	NA	coding protein	psRNATarget