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BaseInfo

ncRNA ID	novel_zma_miR6103
Species	Zea mays
Class	miRNA
Genome position	Chr2:39371163-39371217 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647386;SRR2647387;SRR2647389;SRR2647390;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - AUUUCUAUUUUCCCAAGGGAAUUU - 24
Stem-loop(if miRNA)	--             --C        UU   AUUUCUAUUUUCC   AAGGGAAU  A   |||||||||||||   ||||||||  G   UAAAGAUAAAAGG   UUUUUUUA  U UC             UUA        CU
Stem-loop sequence	AUUUCUAUUUUCCCAAGGGAAUUUAGUUCAUUUUUUUAUUGGAAAAUAGAAAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU957492.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   ||*||||||||||||||||||||| targets:1746   AAUUUCCCUUGGGAAAAUAGAAAU   1769 Target Full Sequence	0.0	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**||=|||||||||||||||||| targets:804   AUUUUUCCUUGGGAAAAUAGAAAU   827 Target Full Sequence	1.0	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660198.2	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   ||*||||||||||||||||*|||| targets:971   AAUUUCCCUUGGGAAAAUAAAAAU   994 Target Full Sequence	1.5	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   ||*||||||||||||||||*|||| targets:124   AAUUUCCCUUGGGAAAAUAAAAAU   147 Target Full Sequence	1.5	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget
EZ071949.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||||||||||||||||=||| targets:114   AUUUUCCCUUGGGAAAAUAGGAAU   137 Target Full Sequence	1.5	TSA: Zea mays contig07586, mRNA sequence	NA	coding protein	psRNATarget
BT055900.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   ||*||==|||*||||||||||||| targets:1397   AAUUUUUCUUAGGAAAAUAGAAAU   1420 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0026G06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153204.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   ||*||==|||*||||||||||||| targets:1397   AAUUUUUCUUAGGAAAAUAGAAAU   1420 Target Full Sequence	3.0	Zea mays Omega-amidase chloroplastic (LOC100280276), mRNA	NA	coding protein	psRNATarget
EU960273.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**||||||||||||||*|||||| targets:742   AUUUUCCCUUGGGAAAACAGAAAU   765 Target Full Sequence	1.5	Zea mays clone 223065 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149998.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**||||||||||||||*|||||| targets:742   AUUUUCCCUUGGGAAAACAGAAAU   765 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276138 (LOC100276138), mRNA	NA	coding protein	psRNATarget
XM_008674763.2	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:1300   AUUUUCUCUUGAGAAAAUAGAAAU   1323 Target Full Sequence	2.5	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064672.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:1311   AUUUUCUCUUGAGAAAAUAGAAAU   1334 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008O01 mRNA, complete cds	NA	coding protein	psRNATarget
EU970039.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:1205   AUUUUCUCUUGAGAAAAUAGAAAU   1228 Target Full Sequence	2.5	Zea mays clone 338909 stress regulated protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157788.2	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:1204   AUUUUCUCUUGAGAAAAUAGAAAU   1227 Target Full Sequence	2.5	Zea mays stress regulated protein (LOC100284893), mRNA	NA	coding protein	psRNATarget
BT037070.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:1192   AUUUUCUCUUGAGAAAAUAGAAAU   1215 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0153L10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674764.2	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:1110   AUUUUCUCUUGAGAAAAUAGAAAU   1133 Target Full Sequence	2.5	PREDICTED: Zea mays stress regulated protein (LOC100284893), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT065169.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:1107   AUUUUCUCUUGAGAAAAUAGAAAU   1130 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0015J15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ112868.1	ncRNA:24   UUUAAGGGAACCCUUUUAUCUUUA   1   |**|||=||||*|||||||||||| targets:117   AUUUUCUCUUGAGAAAAUAGAAAU   140 Target Full Sequence	2.5	TSA: Zea mays contig48529, mRNA sequence	NA	coding protein	psRNATarget