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BaseInfo

ncRNA ID novel_zma_miR6089
Species Zea mays
Class miRNA
Genome position Chr2:231873823-231873972 [-]
Reference genome RefGen_v4
Source SRR2647343;SRR2647388;SRR2647389
Length 24
Mature sequence(if miRNA) 1 - UCUCCGAGUCCAACGCAAGUAGGG - 24
Stem-loop(if miRNA) --UA                        -       U                             -CU G    A
    ACUUGCGUUGGACUCGGAGAGCUC UGUUGCA GGAUAAGUUUUAGUCCCUCUCAGCAUCGU   A UCUU A
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||   | ||||
    UGAACGCAACCUGAGCCUCUCGAG ACAACGU CCUGUUCAAGAUCAGGGAGAGUCGUAGCA   U AGAA G
GGGA                        G       C                             CCC G    A
Stem-loop sequence UAACUUGCGUUGGACUCGGAGAGCUCUGUUGCAUGGAUAAGUUUUAGUCCCUCUCAGCAUCGUCUAGUCUUAAGAAAGAGUCCCACGAUGCUGAGAGGGACUAGAACUUGUCCCUGCAACAGGAGCUCUCCGAGUCCAACGCAAGUAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539714.1
ncRNA:24   GGGAUGAACGCAACCUGAGCCUCU   1
  |=||-|||||||||*||||||||*
targets:208   CUCU-CUUGCGUUGUACUCGGAGC   230

2.5 PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103629015), mRNA NA coding protein psRNATarget