Search result

BaseInfo

ncRNA ID	novel_zma_miR6086
Species	Zea mays
Class	miRNA
Genome position	Chr2:2112999-2113066 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647390
Length	23
Mature sequence(if miRNA)	1 - GAUCCAUGGGAAGGAAUCCCCUU - 23
Stem-loop(if miRNA)	--    CAU                UC      A   GAUC   GGGAAGGAAUCCCCUU  UAUUUA A   ||||   ||||||||||||||||  ||||||   CUAG   CUCUUUCUUAGGGGAA  AUAAGU A CC    AUU                CA      U
Stem-loop sequence	GAUCCAUGGGAAGGAAUCCCCUUUCUAUUUAAAAUUGAAUAACAAGGGGAUUCUUUCUCUUAGAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167373.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   ||||||||||||*|||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76 Target Full Sequence	1.5	Sequence 5037 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239042.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   ||||||||||||*|||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76 Target Full Sequence	1.5	Sequence 5037 from Patent EP2985353	NA	coding protein	psRNATarget
HI406912.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   ||||||||||||*|||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76 Target Full Sequence	1.5	Sequence 5037 from Patent EP2074227	NA	coding protein	psRNATarget
BT068562.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   =|||||||||||*|||||||||| targets:1046   GAGGGGAUUCCUCCCCAUGGAUC   1068 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667073.2	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   ||||||||||||*|||||||||= targets:3360   AAGGGGAUUCCUCCCCAUGGAUU   3382 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667075.2	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   ||||||||||||*|||||||||= targets:3376   AAGGGGAUUCCUCCCCAUGGAUU   3398 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667074.2	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   ||||||||||||*|||||||||= targets:3380   AAGGGGAUUCCUCCCCAUGGAUU   3402 Target Full Sequence	2.5	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ235077.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   |||||*||||||*|||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105 Target Full Sequence	2.5	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
JB163408.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   |||||*||||||*|||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105 Target Full Sequence	2.5	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
HI402947.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   |||||*||||||*|||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105 Target Full Sequence	2.5	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
JB170710.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   |||**|||||||*|||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70 Target Full Sequence	2.5	Sequence 8374 from Patent EP2559767	NA	coding protein	psRNATarget
HI410249.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   |||**|||||||*|||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70 Target Full Sequence	2.5	Sequence 8374 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242379.1	ncRNA:23   UUCCCCUAAGGAAGGGUACCUAG   1   |||**|||||||*|||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70 Target Full Sequence	2.5	Sequence 8374 from Patent EP2985353	NA	coding protein	psRNATarget