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BaseInfo

ncRNA ID novel_zma_miR6085
Species Zea mays
Class miRNA
Genome position Chr2:171500658-171500822 [+]
Reference genome RefGen_v4
Source SRR2647343
Length 24
Mature sequence(if miRNA) 1 - CGUGUCUUUGCCGAGUGUGGUCCU - 24
Stem-loop(if miRNA) --  U U   U         -    -  G        -------   CA              -    CG     G     CUA    U
  CG G CUU GCCGAGUGU GGUC CU UGCCGAGU       GUC  GCACUCAGUAAAGA GGCU  UUGCC GGAGC   ACUU A
  || | ||| ||||||||| |||| || ||||||||       |||  |||||||||||||| ||||  ||||| |||||   ||||
  GC C GAA CGGCUCACA CCAG GA ACGGCUCA       CAG  CGUGAGUCGUUUUU CCGA  AACGG UCUCG   UGAG C
AG  U C   -         G    A  A        CAAAAAA   CC              U    --     G     UCG    C
Stem-loop sequence CGUGUCUUUGCCGAGUGUGGUCCUGUGCCGAGUGUCCAGCACUCAGUAAAGAGGCUCGUUGCCGGGAGCCUAACUUUACCGAGUGCUGCUCUGGGCAAAGCCUUUUUUGCUGAGUGCCCGACAAAAAACACUCGGCAAAGAGACCGACACUCGGCAAGCCUCGGA