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BaseInfo

ncRNA ID	novel_zma_miR6084
Species	Zea mays
Class	miRNA
Genome position	Chr10:79116648-79116830 [-]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647389;SRR2647390;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - UUGAUGUGAUCCGGGCUAAACUUU - 24
Stem-loop(if miRNA)	--AA        CU          A       ACC    -UUC       U        UC      UAAAACUAAUUUCUCAGCCGAAGAUU     UUUAGCCU  AUCACAUCGA UGUUUGA   UUCG    GGGGUAU AAAUGUAG  GGAUUA                          A     ||||||||  |||||||||| |||||||   ||||    ||||||| ||||||||  ||||||     AAAUCGGG  UAGUGUAGUU GCAAACU   AAGU    CCUUAUA UUUAUAUC  GGGUUG                          A UUUC        CC          C       -GA    UUAU       C        -U      GUUGACAUGAUCUAAGCAGAGUGAAA
Stem-loop sequence	AAUUUAGCCUCUAUCACAUCGAAUGUUUGAACCUUCGUUCGGGGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUCUCAGCCGAAGAUUAAAAAGUGAGACGAAUCUAGUACAGUUGGUUGGGUCUAUAUUUCAUAUUCCUAUUUGAAAGUCAAACGCUUGAUGUGAUCCGGGCUAAACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084930.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:144   AAAGUUUAGCCCGGGUCACAUCAA   167 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671848.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:661   AAAGUUUAGCCCGGGUCACAUCAA   684 Target Full Sequence	1.5	PREDICTED: Zea mays subtilisin-like protease SBT3.3 (LOC103647304), mRNA	NA	coding protein	psRNATarget
XM_020540529.1	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:1104   AAAGUUUAGCCCGGGUCACAUCAA   1127 Target Full Sequence	1.5	PREDICTED: Zea mays catalytic/ hydrolase (LOC100282156), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654002.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||=|||=||||||||| targets:704   AAAGUUUAGCUCGGGUCACAUCAA   727 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654001.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||=|||=||||||||| targets:703   AAAGUUUAGCUCGGGUCACAUCAA   726 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X1, mRNA	NA	coding protein	psRNATarget