ncRNA ID | novel_zma_miR6072 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:187709093-187709260 [-] |
Reference genome | RefGen_v4 |
Source | SRR2647343;SRR2647387;SRR2647388;SRR2647390;SRR2647391;SRR1743455;SRR1745812;SRR4237224;SRR4237227 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GGUUUCCACCCAGUUAUGGAUUGG - 24 |
Stem-loop(if miRNA) |
--                         A    A   A      C  C                      A   -- UAAAUUUACA   AAUCCAUAACUGGGUGGAAACCCAU GAAA UCC UGGGUU AG UUGUUAAGGUAGCAGCAUACAC GUG  A          G   ||||||||||||||||||||||||| |||| ||| |||||| || |||||||||||||||||||||| |||  |   UUAGGUAUUGACCCACCUUUGGGUA CUUU GGG GCUCAA UC AAUAAUUUCGUCGUCGUAUGUG CCA  G          G GG                         C    -   A      A  U                      -   CU UAACUUCGAU |
Stem-loop sequence | AAUCCAUAACUGGGUGGAAACCCAUAGAAAAUCCAUGGGUUCAGCUUGUUAAGGUAGCAGCAUACACAGUGAUAAAUUUACAGGUAGCUUCAAUGUCACCGUGUAUGCUGCUGCUUUAAUAAUCUAAACUCGAGGGUUUCCAUGGGUUUCCACCCAGUUAUGGAUUGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008675165.2 |
|
0.0 | PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
EU961754.1 |
|
2.5 | Zea mays clone 238086 thiosulfate transferase mRNA, complete cds | NA | coding protein | psRNATarget |