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BaseInfo

ncRNA ID novel_zma_miR6072
Species Zea mays
Class miRNA
Genome position Chr1:187709093-187709260 [-]
Reference genome RefGen_v4
Source SRR2647343;SRR2647387;SRR2647388;SRR2647390;SRR2647391;SRR1743455;SRR1745812;SRR4237224;SRR4237227
Length 24
Mature sequence(if miRNA) 1 - GGUUUCCACCCAGUUAUGGAUUGG - 24
Stem-loop(if miRNA) --                         A    A   A      C  C                      A   -- UAAAUUUACA
  AAUCCAUAACUGGGUGGAAACCCAU GAAA UCC UGGGUU AG UUGUUAAGGUAGCAGCAUACAC GUG  A          G
  ||||||||||||||||||||||||| |||| ||| |||||| || |||||||||||||||||||||| |||  |
  UUAGGUAUUGACCCACCUUUGGGUA CUUU GGG GCUCAA UC AAUAAUUUCGUCGUCGUAUGUG CCA  G          G
GG                         C    -   A      A  U                      -   CU UAACUUCGAU
Stem-loop sequence AAUCCAUAACUGGGUGGAAACCCAUAGAAAAUCCAUGGGUUCAGCUUGUUAAGGUAGCAGCAUACACAGUGAUAAAUUUACAGGUAGCUUCAAUGUCACCGUGUAUGCUGCUGCUUUAAUAAUCUAAACUCGAGGGUUUCCAUGGGUUUCCACCCAGUUAUGGAUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008675165.2
ncRNA:24   GGUUAGGUAUUGACCCACCUUUGG   1
  ||||||||||||||||||||||||
targets:919   CCAAUCCAUAACUGGGUGGAAACC   942

0.0 PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA NA coding protein psRNATarget
EU961754.1
ncRNA:24   GGUUAGGUAUUGACCCACCUUUGG   1
  ||||*||=|||=||||||||||||
targets:1597   CCAACCCGUAAUUGGGUGGAAACC   1620

2.5 Zea mays clone 238086 thiosulfate transferase mRNA, complete cds NA coding protein psRNATarget