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BaseInfo

ncRNA ID	novel_zma_miR6070
Species	Zea mays
Class	miRNA
Genome position	Chr1:199137530-199137737 [-]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647385;SRR2647388
Length	24
Mature sequence(if miRNA)	185 - UGCUCCUGCUAAAGUUUAGCCUGG - 208
Stem-loop(if miRNA)	--   -                   GG   A   -   GC      -      AAUA  A    C    A   ACCCAACCAACU    ------U   UUCGUCUCGUCUUUUA   UGC UCCUGCUAAAGUUUAGCCU  GUC CAU GAA  GUUUGA CUUUUA    GG GUAU AAAU UAG            GGAC       AGA                A   ||| |||||||||||||||||||  ||| ||| |||  |||||| ||||||    || |||| |||| |||            ||||       |||                U   AUG GGGGCGAUUUUAAAUCGGG  CAG GUA CUU  CAAACU GGAGGU    CC CAUA UUUA AUC            AGCC       UUG                C CA   U                   GA   G   G   -A      U      AAAG  -    A    C   ------------    UAAUAUU   AUUAAACAGUCGGCUU
Stem-loop sequence	UGCUCCUGCUAAAGUUUAGCCUGGGUCACAUGAAGCGUUUGACUUUUAAAUAGGAGUAUCAAAUAUAGACCCAACCAACUGGACUAGAUUCGUCUCGUCUUUUAAUCUUCGGCUGACAAAUUAGUUUUAUAAUCCGACUACAUUUAAUACCCGAAAUGGAGGUUCAAACAUUCGAUGGGACAGGGGCUAAAUUUUAGCGGGGUGUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084930.2	ncRNA:24   GGUCCGAUUUGAAAUCGUCCUCGU   1   **=|||||||=|||||||||=||| targets:315   AGGGGCUAAAUUUUAGCAGGGGCA   338 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
EU957829.1	ncRNA:24   GGUCCGAUUUGAAAUCGUCCUCGU   1   **=|||||||=|||||||||=||| targets:1981   AGGGGCUAAAUUUUAGCAGGGGCA   2004 Target Full Sequence	2.5	Zea mays clone 1624895 amino acid permease mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154684.1	ncRNA:24   GGUCCGAUUUGAAAUCGUCCUCGU   1   **=|||||||=|||||||||=||| targets:1981   AGGGGCUAAAUUUUAGCAGGGGCA   2004 Target Full Sequence	2.5	Zea mays amino acid permease (LOC100281764), mRNA	NA	coding protein	psRNATarget
XM_020544947.1	ncRNA:24   GGUCCGAUUUGAAAUCGUCCUCGU   1   ||=|*||||||||||||||*|||| targets:2909   CCGGACUAAACUUUAGCAGUAGCA   2932 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063734.2	ncRNA:24   GGUCCGAUUUGAAAUCGUCCUCGU   1   **||*||*||||||||||||||=| targets:75   AGAGCCUCAACUUUAGCAGGAGUA   98 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0101P15 mRNA, complete cds	NA	coding protein	psRNATarget