Search result

BaseInfo

ncRNA ID	novel_zma_miR6067
Species	Zea mays
Class	miRNA
Genome position	Chr7:168263069-168263184 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	1 - GUUCGGUUGUUAGGGAUUGGAGCC - 24
Stem-loop(if miRNA)	--          -UA     UG     CC     G    C    -  GAUUACU   C  A   GUUCGGUUGU   GGGAU  GAGCC  GGAUU AUUC UAGC CG       UCU UA U   ||||||||||   |||||  |||||  ||||| |||| |||| ||       ||| || U   CAAGCCAACA   CCUUA  UUUGG  CCUAA UAAG AUCG GU       AGA AU U GG          UGG     --     -U     G    -    A  -AGUUUU   U  A
Stem-loop sequence	GUUCGGUUGUUAGGGAUUGGAGCCCCGGAUUGAUUCCUAGCCGGAUUACUUCUCUAAUUUAUAUAGAUUUUGAUGAGCUAGAAUGAAUCCUGGUUUAUUCCGGUACAACCGAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU964623.1	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   *||||||||||||||||||||||| targets:8   AGCUCCAAUCCCUAACAACCGAAC   31 Target Full Sequence	0.0	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
EU956338.1	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   ||||=|*||||||||||||||||| targets:1167   GGCUUCCAUCCCUAACAACCGAAC   1190 Target Full Sequence	1.0	Zea mays clone 1560970 dehydration-responsive element-binding protein 1B mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154241.1	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   ||||=|*||||||||||||||||| targets:1167   GGCUUCCAUCCCUAACAACCGAAC   1190 Target Full Sequence	1.0	Zea mays dehydration-responsive element-binding protein 1B (LOC100281323), mRNA	NA	coding protein	psRNATarget
NM_001350330.1	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   ||||*||||||=|||||||||||| targets:3263   GGCUGCAAUCCUUAACAACCGAAC   3286 Target Full Sequence	1.5	Zea mays uncharacterized LOC100191405 (LOC100191405), mRNA	NA	coding protein	psRNATarget
NM_001138362.1	ncRNA:24   CC-GAGGUUAGGGAUUGUUGGCUUG   1   ||-||||||||||*||||||||||| targets:1581   GGACUCCAAUCCCAAACAACCGAAC   1605 Target Full Sequence	1.5	Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA	NA	coding protein	psRNATarget
BT035415.1	ncRNA:24   CC-GAGGUUAGGGAUUGUUGGCUUG   1   ||-||||||||||*||||||||||| targets:1581   GGACUCCAAUCCCAAACAACCGAAC   1605 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646954.2	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   *||||||||||||||*|||||||= targets:595   AGCUCCAAUCCCUAAAAACCGAAU   618 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626534 (LOC103626534), mRNA	NA	coding protein	psRNATarget
EZ082402.1	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   ||||*||||||||||*|||||||| targets:2   GGCUACAAUCCCUAAAAACCGAAC   25 Target Full Sequence	1.5	TSA: Zea mays contig18045, mRNA sequence	NA	coding protein	psRNATarget
XM_008658753.2	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   |||||*|||||*|||||||||||| targets:1897   GGCUCAAAUCCAUAACAACCGAAC   1920 Target Full Sequence	2.5	PREDICTED: Zea mays probable carboxylesterase 16 (LOC103636397), mRNA	NA	coding protein	psRNATarget
AY111146.1	ncRNA:24   CCGAGGUUAGGGAUUGUUGGCUUG   1   *||||*|||||*|||||||||||| targets:14   AGCUCAAAUCCAUAACAACCGAAC   37 Target Full Sequence	2.5	Zea mays CL11992_1 mRNA sequence	NA	coding protein	psRNATarget