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BaseInfo

ncRNA ID novel_zma_miR6065
Species Zea mays
Class miRNA
Genome position Chr1:306166074-306166154 [+]
Reference genome RefGen_v4
Source SRR2647343
Length 24
Mature sequence(if miRNA) 1 - GCUCUCGGGUUGCGAUGUCCUGUG - 24
Stem-loop(if miRNA) --   CU       C A    --    G   CACC UC   U
  GCU  CGGGUUG G UGUC  CUGU CGC    C  CGG U
  |||  ||||||| | ||||  |||| |||    |  ||| G
  UGA  GCCCGGC C GCAG  GACA GUG    G  GCC G
AG   UU       - -    UU    G   AGAC UU   G
Stem-loop sequence GCUCUCGGGUUGCGAUGUCCUGUGCGCCACCCUCCGGUUGGGCCGUUGCAGAGUGGACAGUUGACGCCGGCCCGUUAGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ080589.1
ncRNA:24   GUGUCCUGUAGCGUUGGGCUCUCG   1
  |||||*|||||||||||||=||||
targets:21   CACAGAACAUCGCAACCCGGGAGC   44

2.5 TSA: Zea mays contig16228, mRNA sequence NA coding protein psRNATarget
BT066496.1
ncRNA:24   GUGUCCUGUAGCGUUGGGCUCUCG   1
  *=||||||||||=||||||||||=
targets:1812   GGCAGGACAUCGUAACCCGAGAGU   1835

2.5 Zea mays full-length cDNA clone ZM_BFb0013G06 mRNA, complete cds NA coding protein psRNATarget