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BaseInfo

ncRNA ID	novel_zma_miR6057
Species	Zea mays
Class	miRNA
Genome position	Chr1:227989288-227989470 [+]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647385;SRR2647387;SRR2647390;SRR2647467;SRR1583943
Length	24
Mature sequence(if miRNA)	160 - UUGAUGUGAUCCGGGCUAAACUUU - 183
Stem-loop(if miRNA)	--AA       ACU          A       ACC  -C  UC       U        UC      UAAAACUAAUUUCUCAGCCGAAGAUU     UUUAGCC   AUCACAUCGA UGUUUGA   UC  GU  GGGGUAU AAAUGUAG  GGAUUA                          A     |||||||   |||||||||| |||||||   ||  ||  ||||||| ||||||||  ||||||     AAAUCGG   UAGUGUAGUU GCAAACU   AG  CA  CCUCAUA UUUAUAUC  GGGUUG                          A UUUC       GCC          C       GAA  UU  -U       C        -U      GUUGACAUGAUCUAAGCAGAGUGAAA
Stem-loop sequence	AAUUUAGCCACUAUCACAUCGAAUGUUUGAACCUCCGUUCGGGGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUCUCAGCCGAAGAUUAAAAAGUGAGACGAAUCUAGUACAGUUGGUUGGGUCUAUAUUUCAUACUCCUACUUGAAAGUCAAACGCUUGAUGUGAUCCGGGCUAAACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084930.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:144   AAAGUUUAGCCCGGGUCACAUCAA   167 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671848.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:661   AAAGUUUAGCCCGGGUCACAUCAA   684 Target Full Sequence	1.5	PREDICTED: Zea mays subtilisin-like protease SBT3.3 (LOC103647304), mRNA	NA	coding protein	psRNATarget
XM_020540529.1	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:1104   AAAGUUUAGCCCGGGUCACAUCAA   1127 Target Full Sequence	1.5	PREDICTED: Zea mays catalytic/ hydrolase (LOC100282156), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654002.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||=|||=||||||||| targets:704   AAAGUUUAGCUCGGGUCACAUCAA   727 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654001.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||=|||=||||||||| targets:703   AAAGUUUAGCUCGGGUCACAUCAA   726 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X1, mRNA	NA	coding protein	psRNATarget