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BaseInfo

ncRNA ID	novel_zma_miR6024
Species	Zea mays
Class	miRNA
Genome position	Chr6:69355583-69355679 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	22
Mature sequence(if miRNA)	76 - CGUCGAUCCAUUCUGCCAGCGA - 97
Stem-loop(if miRNA)	--  -  G     C     A    UGC    AACGU     CCA       G   GC GG AGAAU GGAUC AUGC   UGAU     UUAAU   UUGAGCC U   || || ||||| ||||| ||||   ||||     |||||   ||||||| C   CG CC UCUUA CCUAG UGCG   ACUA     AGUUG   AGCUCGG U AG  A  G     -     C    --U    -GCCU     ---       G
Stem-loop sequence	GCGGGAGAAUCGGAUCAAUGCUGCUGAUAACGUUUAAUCCAUUGAGCCGUCUGGGCUCGAGUUGAUCCGAUCAUGCGUCGAUCCAUUCUGCCAGCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001176386.1	ncRNA:22   AGCGACCGUCUUACCUAGCUGC   1   **||*|||||||*||||||||| targets:263   AAGCAGGCAGAACGGAUCGACG   284 Target Full Sequence	2.5	Zea mays Regulator of Vps4 activity in the MVB pathway protein (si707005d07), mRNA	NA	coding protein	psRNATarget
BT068201.1	ncRNA:22   AGCGACCGUCUUACCUAGCUGC   1   **||*|||||||*||||||||| targets:263   AAGCAGGCAGAACGGAUCGACG   284 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0092D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679404.2	ncRNA:22   AGCGACCGUCUUACCUAGCUGC   1   **||*|||||||*||||||||| targets:1846   AAGCAGGCAGAACGGAUCGACG   1867 Target Full Sequence	2.5	PREDICTED: Zea mays Regulator of Vps4 activity in the MVB pathway protein (si707005d07), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551690.1	ncRNA:22   AGCGACCGUCUUACCUAGCUGC   1   **||*|||||||*||||||||| targets:3868   AAGCAGGCAGAACGGAUCGACG   3889 Target Full Sequence	2.5	PREDICTED: Zea mays Regulator of Vps4 activity in the MVB pathway protein (si707005d07), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU947340.1	ncRNA:22   AGCGACCGUCUUACCUAGCUGC   1   **|=|||**||||||||||||| targets:237   GGGUUGGAUGAAUGGAUCGACG   258 Target Full Sequence	3.0	Zea mays clone 339956 mRNA sequence	NA	coding protein	psRNATarget