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BaseInfo

ncRNA ID novel_zma_miR6013
Species Zea mays
Class miRNA
Genome position Chr8:146731734-146731806 [+]
Reference genome RefGen_v4
Source SRR2647343
Length 23
Mature sequence(if miRNA) 1 - CAAAGUCUUUGCCGAGUGUGGUA - 23
Stem-loop(if miRNA) -----CAA            G    G AC   G   AG
        AGUCUUUGCCGA UGUG U  UCG CAA  A
        |||||||||||| |||| |  ||| |||  G
        UCAGAAGCGGCU ACAU A  AGC GUU  G
CCGUUUCG            -    G CA   G   CG
Stem-loop sequence CAAAGUCUUUGCCGAGUGUGGUACUCGGCAAAGAGGGCUUGGCGAACAGUACAUCGGCGAAGACUGCUUUGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ050721.1
ncRNA:23   AUGGUGUGAGCCGUUUCUGAAAC   1
  |==|||||||*||||||||||||
targets:63   UGUCACACUCAGCAAAGACUUUG   85

1.5 TSA: Zea mays contig51841, mRNA sequence NA coding protein psRNATarget
EZ052892.1
ncRNA:23   AUGGUGUGAGCCGUUUCUGAAAC   1
  |*==|||||||||||||=|||||
targets:83   UUUUACACUCGGCAAAGGCUUUG   105

1.5 TSA: Zea mays contig54013, mRNA sequence NA coding protein psRNATarget