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BaseInfo

ncRNA ID novel_zma_miR6012
Species Zea mays
Class miRNA
Genome position Chr7:78082212-78082264 [+]
Reference genome RefGen_v4
Source SRR2647343;SRR2647385;SRR2647386;SRR2647388
Length 24
Mature sequence(if miRNA) 1 - CAGACUGUUCGGUGUGCAUCGGAC - 24
Stem-loop(if miRNA) ----CAG           UG      A
       ACUGUUCGGUG  CAUCGG C
       |||||||||||  |||||| U
       UGAUAGGCCAC  GUGGCC G
UGGCCUG           GU      U
Stem-loop sequence CAGACUGUUCGGUGUGCAUCGGACUGUCCGGUGUGCACCGGAUAGUGUCCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940974.1
ncRNA:24   CAGGCUACGUGUGGCUUGUCAGAC   1
  |||||=|||||||||=||||||||
targets:2766   GUCCGGUGCACACCGGACAGUCUG   2789

2.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
LQ242009.1
ncRNA:24   CAGGCUACGUGUGGCUUGUCAGAC   1
  |||||=||==||||||||||||||
targets:77   GUCCGGUGUGCACCGAACAGUCUG   100

3.0 Sequence 8004 from Patent EP2985353 NA coding protein psRNATarget
JB170340.1
ncRNA:24   CAGGCUACGUGUGGCUUGUCAGAC   1
  |||||=||==||||||||||||||
targets:77   GUCCGGUGUGCACCGAACAGUCUG   100

3.0 Sequence 8004 from Patent EP2559767 NA coding protein psRNATarget
HI409879.1
ncRNA:24   CAGGCUACGUGUGGCUUGUCAGAC   1
  |||||=||==||||||||||||||
targets:77   GUCCGGUGUGCACCGAACAGUCUG   100

3.0 Sequence 8004 from Patent EP2074227 NA coding protein psRNATarget
JB169550.1
ncRNA:24   CAGGCUACGUGUGGCUUGUCAGAC   1
  ||||*=||||||||*|||||||||
targets:191   GUCCAGUGCACACCAAACAGUCUG   214

2.5 Sequence 7214 from Patent EP2559767 NA coding protein psRNATarget
HI409089.1
ncRNA:24   CAGGCUACGUGUGGCUUGUCAGAC   1
  ||||*=||||||||*|||||||||
targets:191   GUCCAGUGCACACCAAACAGUCUG   214

2.5 Sequence 7214 from Patent EP2074227 NA coding protein psRNATarget
LQ241219.1
ncRNA:24   CAGGCUACGUGUGGCUUGUCAGAC   1
  ||||*=||||||||*|||||||||
targets:191   GUCCAGUGCACACCAAACAGUCUG   214

2.5 Sequence 7214 from Patent EP2985353 NA coding protein psRNATarget
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