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BaseInfo

ncRNA ID	novel_zma_miR6009
Species	Zea mays
Class	miRNA
Genome position	Chr7:5464939-5465024 [-]
Reference genome	RefGen_v4
Source	SRR2647343
Length	24
Mature sequence(if miRNA)	1 - UAAGAAAACCGCCACUAGAAAUCU - 24
Stem-loop(if miRNA)	--                -C      AA               U   AUUUCUAGUGGCGGUU  CUUAAG  AACCGCCACUAGAAA C   ||||||||||||||||  ||||||  |||||||||||||||   UAAAGAUCACCGCCAA  GAAUUC  UUGGCGGUGAUUUUU G UC                AA      -C               A
Stem-loop sequence	AUUUCUAGUGGCGGUUCCUUAAGAAAACCGCCACUAGAAAUCGAUUUUUAGUGGCGGUUCCUUAAGAAAACCGCCACUAGAAAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163515.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   |||||||||||||||||||||||| targets:33   AGAUUUCUAGUGGCGGUUUUCUUA   56 Target Full Sequence	0.0	Sequence 1179 from Patent EP2559767	NA	coding protein	psRNATarget
HI403054.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   |||||||||||||||||||||||| targets:33   AGAUUUCUAGUGGCGGUUUUCUUA   56 Target Full Sequence	0.0	Sequence 1179 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235184.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   |||||||||||||||||||||||| targets:33   AGAUUUCUAGUGGCGGUUUUCUUA   56 Target Full Sequence	0.0	Sequence 1179 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235156.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:8   CGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	0.0	Sequence 1151 from Patent EP2985353	NA	coding protein	psRNATarget
JB163487.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:8   CGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	0.0	Sequence 1151 from Patent EP2559767	NA	coding protein	psRNATarget
HI403026.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:8   CGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	0.0	Sequence 1151 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:80   UGAUUUCUAGUGGCGGUUUUCUUA   103 Target Full Sequence	0.0	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:80   UGAUUUCUAGUGGCGGUUUUCUUA   103 Target Full Sequence	0.0	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:80   UGAUUUCUAGUGGCGGUUUUCUUA   103 Target Full Sequence	0.0	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
HI403012.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:8   UGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	0.0	Sequence 1137 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235142.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:8   UGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	0.0	Sequence 1137 from Patent EP2985353	NA	coding protein	psRNATarget
JB163473.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *||||||||||||||||||||||| targets:8   UGAUUUCUAGUGGCGGUUUUCUUA   31 Target Full Sequence	0.0	Sequence 1137 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *|||||=||||||||||||||||| targets:80   UGAUUUUUAGUGGCGGUUUUCUUA   103 Target Full Sequence	1.0	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *|||||=||||||||||||||||| targets:80   UGAUUUUUAGUGGCGGUUUUCUUA   103 Target Full Sequence	1.0	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *|||||=||||||||||||||||| targets:80   UGAUUUUUAGUGGCGGUUUUCUUA   103 Target Full Sequence	1.0	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
EU943186.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   *|||||*||||||||||||||||| targets:1967   UGAUUUGUAGUGGCGGUUUUCUUA   1990 Target Full Sequence	1.0	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
HI403085.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   =|||||=||**||||||||||||| targets:36   GGAUUUUUACAGGCGGUUUUCUUA   59 Target Full Sequence	3.0	Sequence 1210 from Patent EP2074227	NA	coding protein	psRNATarget
JB163546.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   =|||||=||**||||||||||||| targets:36   GGAUUUUUACAGGCGGUUUUCUUA   59 Target Full Sequence	3.0	Sequence 1210 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235215.1	ncRNA:24   UCUAAAGAUCACCGCCAAAAGAAU   1   =|||||=||**||||||||||||| targets:36   GGAUUUUUACAGGCGGUUUUCUUA   59 Target Full Sequence	3.0	Sequence 1210 from Patent EP2985353	NA	coding protein	psRNATarget