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BaseInfo

ncRNA ID	novel_zma_miR6000
Species	Zea mays
Class	miRNA
Genome position	Chr7:173752768-173752900 [+]
Reference genome	RefGen_v4
Source	SRR2647343
Length	23
Mature sequence(if miRNA)	1 - CAAUCAAGCGAUCUAGUGCAUCC - 23
Stem-loop(if miRNA)	--         G      U  A       AAA       CCCCUUCCACCAGAAACUUA   CCCAUUUUACAUU   CAAUCAAGC AUCUAG GC UCCAAUC   AUUCAAA                    GUA             C   ||||||||| |||||| || |||||||   |||||||                    |||   GUUAGUUUG UAGGUU UG AGGUUAG   UAGGUUU                    AAG             A AC         G      U  A       AUC       -----------------CAA   UAUAACUUCUCUA
Stem-loop sequence	CAAUCAAGCGAUCUAGUGCAUCCAAUCAAAAUUCAAACCCCUUCCACCAGAAACUUAGUACCCAUUUUACAUUCAAUCUCUUCAAUAUGAAAACUUUGGAUCUAGAUUGGAAGUUUUGGAUGGUUUGAUUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU955857.1	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||=|||||||||||||||| targets:542   GGAUGCGCUAGAUCGCUUGAUUG   564 Target Full Sequence	1.0	Zea mays clone 1549251 RING zinc finger protein-like mRNA, complete cds	NA	coding protein	psRNATarget
EU954880.1	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||||||||| targets:775   GGAUGCACCAGAUCGCUUGAUUG   797 Target Full Sequence	1.0	Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661850.2	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||||||||| targets:776   GGAUGCACCAGAUCGCUUGAUUG   798 Target Full Sequence	1.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008661851.2	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||||||||| targets:789   GGAUGCACCAGAUCGCUUGAUUG   811 Target Full Sequence	1.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538318.1	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||||||||| targets:169   GGAUGCACCAGAUCGCUUGAUUG   191 Target Full Sequence	1.0	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA	NA	coding protein	psRNATarget
XM_008676293.2	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||||||||| targets:1667   GGAUGCACCAGAUCGCUUGAUUG   1689 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008676292.2	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||||||||| targets:1839   GGAUGCACCAGAUCGCUUGAUUG   1861 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676294.2	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||||||||| targets:2012   GGAUGCACCAGAUCGCUUGAUUG   2034 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
EZ054257.1	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   ||||||||*|||||||*|||||| targets:114   GGAUGCACCAGAUCGCGUGAUUG   136 Target Full Sequence	2.5	TSA: Zea mays contig55379, mRNA sequence	NA	coding protein	psRNATarget
HI403291.1	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   *|||||||*|*|||||||||||| targets:169   AGAUGCACCAAAUCGCUUGAUUG   191 Target Full Sequence	2.5	Sequence 1416 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235421.1	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   *|||||||*|*|||||||||||| targets:169   AGAUGCACCAAAUCGCUUGAUUG   191 Target Full Sequence	2.5	Sequence 1416 from Patent EP2985353	NA	coding protein	psRNATarget
JB163752.1	ncRNA:23   CCUACGUGAUCUAGCGAACUAAC   1   *|||||||*|*|||||||||||| targets:169   AGAUGCACCAAAUCGCUUGAUUG   191 Target Full Sequence	2.5	Sequence 1416 from Patent EP2559767	NA	coding protein	psRNATarget