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BaseInfo

ncRNA ID	novel_zma_miR5997
Species	Zea mays
Class	miRNA
Genome position	Chr6:128724720-128724897 [+]
Reference genome	RefGen_v4
Source	SRR2647343
Length	24
Mature sequence(if miRNA)	155 - GUCUAUAGAAACCAAACACCCUCU - 178
Stem-loop(if miRNA)	---AA           G  G            U                          CC       C       C       G   UA      GUGUUUGGUUU UA GGACUAAUUUUU GUCCCUCUAUUUUAUUUUAUUUUAGU  CUAAAUU CUAAAUA UGAAAAU AAA  G      ||||||||||| || |||||||||||| ||||||||||||||||||||||||||  ||||||| ||||||| ||||||| |||      CACAAACCAAA AU UCUGAUUAAAAA CAGGGAGAUAAAAUAAAGUAAAAUUA  GAUUUAA GAUUUAU ACUUUUG UUU  A UCUCC           G  A            U                          UA       C       -       A   UA
Stem-loop sequence	AAGUGUUUGGUUUGUAGGGACUAAUUUUUUGUCCCUCUAUUUUAUUUUAUUUUAGUCCCUAAAUUCCUAAAUACUGAAAAUGAAAUAGAAUUUUAGUUUUCAUAUUUAGCAAUUUAGAUAUUAAAAUGAAAUAAAAUAGAGGGACUAAAAAUUAGUCUAUAGAAACCAAACACCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU956677.1	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   ||=||||||||||||||||*|||| targets:2007   AGGGGGUGUUUGGUUUCUAGAGAC   2030 Target Full Sequence	1.5	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150110.1	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   |||||||||||||||||||*|||* targets:534   AGAGGGUGUUUGGUUUCUAGAGAA   557 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC103639532), mRNA	NA	coding protein	psRNATarget
EU961152.1	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   |||||||||||||||||||*|||* targets:534   AGAGGGUGUUUGGUUUCUAGAGAA   557 Target Full Sequence	2.5	Zea mays clone 232918 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY104339.1	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   =||||||*||||||||||||=||| targets:1679   GGAGGGUAUUUGGUUUCUAUGGAC   1702 Target Full Sequence	2.5	Zea mays PCO120561 mRNA sequence	NA	coding protein	psRNATarget
XM_020551471.1	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   =||||||*||||||||||||=||| targets:2202   GGAGGGUAUUUGGUUUCUAUGGAC   2225 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020551472.1	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   =||||||*||||||||||||=||| targets:2204   GGAGGGUAUUUGGUUUCUAUGGAC   2227 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008678835.2	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   =||||||*||||||||||||=||| targets:2377   GGAGGGUAUUUGGUUUCUAUGGAC   2400 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678837.2	ncRNA:24   UCUCCCACAAACCAAAGAUAUCUG   1   =||||||*||||||||||||=||| targets:2388   GGAGGGUAUUUGGUUUCUAUGGAC   2411 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU967404.1	ncRNA:24   UCUCC-CACAAACCAAAGAUAUCUG   1   |*|||-||||||||||||||||||= targets:998   AAAGGAGUGUUUGGUUUCUAUAGAU   1022 Target Full Sequence	3.0	Zea mays clone 302545 GTPase activating protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138696.1	ncRNA:24   UCUCC-CACAAACCAAAGAUAUCUG   1   |*|||-||||||||||||||||||= targets:998   AAAGGAGUGUUUGGUUUCUAUAGAU   1022 Target Full Sequence	3.0	Zea mays uncharacterized LOC100193590 (umc2776), mRNA	NA	coding protein	psRNATarget
XM_008676145.2	ncRNA:24   UCUC--CCACAAACCAAAGAUAUCUG   1   **||--||||||||||||||||=||| targets:823   UAAGUAGGUGUUUGGUUUCUAUGGAC   848 Target Full Sequence	1.5	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget