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BaseInfo

ncRNA ID	novel_zma_miR5988
Species	Zea mays
Class	miRNA
Genome position	Chr6:153897523-153897643 [-]
Reference genome	RefGen_v4
Source	SRR2647343
Length	24
Mature sequence(if miRNA)	1 - UCCGGUUUUAUGGCUCCCAAACUA - 24
Stem-loop(if miRNA)	--     A      CA           G          A        CC           A   GUUUG GAGCCA  AAAACCGGAGG GAUUGGAGGG CUAGAAUC  CUUCUUAUUUA A   ||||| ||||||  ||||||||||| |||||||||| ||||||||  |||||||||||   CAAAC CUCGGU  UUUUGGCCUCC CUAACUUUCC GAUCUUAG  GAAGAAUAAAU A AU     C      -A           A          C        AA           U
Stem-loop sequence	GUUUGAGAGCCACAAAAACCGGAGGGGAUUGGAGGGACUAGAAUCCCCUUCUUAUUUAAAAUUAAAUAAGAAGAAGAUUCUAGCCCUUUCAAUCACCUCCGGUUUUAUGGCUCCCAAACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544327.1	ncRNA:24   AUCAAACCCUCGGUAUUUUGGCCU   1   |||||||||||||||||||||||| targets:4529   UAGUUUGGGAGCCAUAAAACCGGA   4552 Target Full Sequence	0.0	PREDICTED: Zea mays putative disease resistance protein RGA3 (LOC103638075), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   AUCAAACCCUCGGUAUUUUGGCCU   1   ||||||||||||||*||||||||| targets:137   UAGUUUGGGAGCCAGAAAACCGGA   160 Target Full Sequence	1.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
EU973182.1	ncRNA:24   AUCAAACCCUCGGUAUUUUGGCCU   1   ||||||||||||||*||||||||| targets:1202   UAGUUUGGGAGCCACAAAACCGGA   1225 Target Full Sequence	1.5	Zea mays clone 394629 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151652.1	ncRNA:24   AUCAAACCCUCGGUAUUUUGGCCU   1   ||||||||||||||*||||||||| targets:1202   UAGUUUGGGAGCCACAAAACCGGA   1225 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278349 (LOC100278349), mRNA	NA	coding protein	psRNATarget