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BaseInfo

ncRNA ID	novel_zma_miR5973
Species	Zea mays
Class	miRNA
Genome position	Chr5:188789590-188789772 [-]
Reference genome	RefGen_v4
Source	SRR2647343;SRR2647388
Length	24
Mature sequence(if miRNA)	1 - UUGAUGUGAUCCGGGCUAAACUUU - 24
Stem-loop(if miRNA)	--AA        CU   C              ACCUCCGUUCC      U        -  G     -UAAA    -       AGCCGAAGA     UUUAGCCC  GUC CAUCGAAUGUUUGA           GGGUAU AAAUGUAG UC GAUUA     ACUA AUUUGUC         U     ||||||||  ||| ||||||||||||||           |||||| |||||||| || |||||     |||| |||||||     AAAUCGGG  UAG GUAGUUUGCAAACU           CUCAUA UUUAUAUC GG UUGGU     UGAU UAAACAG         U UUUC        CC   U              GAAAAUUUAUC      C        U  G     UGACC    C       AGCAGAAAA
Stem-loop sequence	AAUUUAGCCCCUGUCCCAUCGAAUGUUUGAACCUCCGUUCCGGGUAUUAAAUGUAGUCGGAUUAUAAAACUAAUUUGUCAGCCGAAGAUUAAAAGACGAGACAAAUCUAGUCCAGUUGGUUGGGUCUAUAUUUCAUACUCCUAUUUAAAAGUCAAACGUUUGAUGUGAUCCGGGCUAAACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT084930.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:144   AAAGUUUAGCCCGGGUCACAUCAA   167 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0209B02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671848.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:661   AAAGUUUAGCCCGGGUCACAUCAA   684 Target Full Sequence	1.5	PREDICTED: Zea mays subtilisin-like protease SBT3.3 (LOC103647304), mRNA	NA	coding protein	psRNATarget
XM_020540529.1	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||||||=||||||||| targets:1104   AAAGUUUAGCCCGGGUCACAUCAA   1127 Target Full Sequence	1.5	PREDICTED: Zea mays catalytic/ hydrolase (LOC100282156), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654002.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||=|||=||||||||| targets:704   AAAGUUUAGCUCGGGUCACAUCAA   727 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654001.2	ncRNA:24   UUUCAAAUCGGGCCUAGUGUAGUU   1   ||||||||||=|||=||||||||| targets:703   AAAGUUUAGCUCGGGUCACAUCAA   726 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103632177), transcript variant X1, mRNA	NA	coding protein	psRNATarget