Search result

BaseInfo

ncRNA ID	novel_zma_miR5968
Species	Zea mays
Class	miRNA
Genome position	Chr4:10718204-10718299 [+]
Reference genome	RefGen_v4
Source	SRR2647343
Length	24
Mature sequence(if miRNA)	1 - CAAAACCGGAGGGGAUUGGAGGGG - 24
Stem-loop(if miRNA)	--              A               C     G      CAA   CAAAACCGGAGGGG UUGGAGGGGCUAGAA CCCCU CUUAUU   A   |||||||||||||| ||||||||||||||| ||||| ||||||   GUUUUGGCCUCCCC AACCUCCCCGAUCUU GGGGA GAAUAA   U GU              C               A     A      AUU
Stem-loop sequence	CAAAACCGGAGGGGAUUGGAGGGGCUAGAACCCCCUGCUUAUUCAAAUUUAAAUAAGAAGGGGAUUCUAGCCCCUCCAACCCCCUCCGGUUUUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT065170.1	ncRNA:24   GGGGAGGUUAGGGGAGGCC-AAAAC   1   |||||||||||||||||||-||||| targets:687   CCCCUCCAAUCCCCUCCGGGUUUUG   711 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   GGGGAGGUUAGGGGAGGCC-AAAAC   1   |||||||||||||||||||-||||| targets:1567   CCCCUCCAAUCCCCUCCGGGUUUUG   1591 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   GGGGAGGUUAGGGGAGGCC-AAAAC   1   |||||||||||||||||||-||||| targets:1587   CCCCUCCAAUCCCCUCCGGGUUUUG   1611 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   GGGGAGGUUAGGGGAGGCC-AAAAC   1   |||||||||||||||||||-||||| targets:1611   CCCCUCCAAUCCCCUCCGGGUUUUG   1635 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   GGGGAGGUUAGGGGAGGCC-AAAAC   1   |||||||||||||||||||-||||| targets:1644   CCCCUCCAAUCCCCUCCGGGUUUUG   1668 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   |||||=|||||||||||||||||* targets:1116   CCCCUUCAAUCCCCUCCGGUUUUU   1139 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   ||||||||||||||||||||*||| targets:3503   CCCCUCCAAUCCCCUCCGGUAUUG   3526 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   ||||||||||||||||||||*||| targets:3538   CCCCUCCAAUCCCCUCCGGUAUUG   3561 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   =|=|||||||||=||||||||||* targets:2087   UCUCUCCAAUCCUCUCCGGUUUUC   2110 Target Full Sequence	2.5	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
EZ066710.1	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   ===||||||||||=|||||||||* targets:63   UUUCUCCAAUCCCUUCCGGUUUUA   86 Target Full Sequence	2.5	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
BT065189.1	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   ===||||||||||=|||||||||* targets:936   UUUCUCCAAUCCCUUCCGGUUUUA   959 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   ===||||||||||=|||||||||* targets:1057   UUUCUCCAAUCCCUUCCGGUUUUA   1080 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
EU965698.1	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   ===||||||||||=|||||||||* targets:1057   UUUCUCCAAUCCCUUCCGGUUUUA   1080 Target Full Sequence	2.5	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:24   GGGGAGGUUAGGGGAGGCCAAAAC   1   ===||||||||||=|||||||||* targets:1264   UUUCUCCAAUCCCUUCCGGUUUUA   1287 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget