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BaseInfo

ncRNA ID	novel_zma_miR5960
Species	Zea mays
Class	miRNA
Genome position	Chr4:92394106-92394185 [-]
Reference genome	RefGen_v4
Source	SRR2647343
Length	24
Mature sequence(if miRNA)	1 - GCAUGUGGGCUCAAUAACUUGGGA - 24
Stem-loop(if miRNA)	--         CUC  G         AGCC    GAG   U   UUAAGUUAU   GU CACAUGCAU    GUCC   GUC U   |||||||||   || |||||||||    ||||   ||| U   GGUUCAAUA   CG GUGUACGUG    CGGG   CAG G AG         ACU  G         --GA    -AA   A
Stem-loop sequence	UUAAGUUAUCUCGUGCACAUGCAUAGCCGUCCGAGGUCUUUGAGACAAGGGCAGGUGCAUGUGGGCUCAAUAACUUGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ100392.1	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |||||||||||||=|||||||||| targets:82   UCCCAAGUUAUUGGGCCCACAUGC   105 Target Full Sequence	1.5	TSA: Zea mays contig36047, mRNA sequence	NA	coding protein	psRNATarget
BT067946.2	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |||||||||||||=|||||||||| targets:403   UCCCAAGUUAUUGGGCCCACAUGC   426 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0003M08 mRNA, complete cds	NA	coding protein	psRNATarget
JB170323.1	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |||=|||||||||=|||||||||| targets:2   UCCUAAGUUAUUGGGCCCACAUGC   25 Target Full Sequence	1.5	Sequence 7987 from Patent EP2559767	NA	coding protein	psRNATarget
HI409862.1	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |||=|||||||||=|||||||||| targets:2   UCCUAAGUUAUUGGGCCCACAUGC   25 Target Full Sequence	1.5	Sequence 7987 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241992.1	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |||=|||||||||=|||||||||| targets:2   UCCUAAGUUAUUGGGCCCACAUGC   25 Target Full Sequence	1.5	Sequence 7987 from Patent EP2985353	NA	coding protein	psRNATarget
JB166437.1	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |=|||||||||||*|||||||||| targets:231   UUCCAAGUUAUUGNGCCCACAUGC   254 Target Full Sequence	1.5	Sequence 4101 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238106.1	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |=|||||||||||*|||||||||| targets:231   UUCCAAGUUAUUGNGCCCACAUGC   254 Target Full Sequence	1.5	Sequence 4101 from Patent EP2985353	NA	coding protein	psRNATarget
HI405976.1	ncRNA:24   AGGGUUCAAUAACUCGGGUGUACG   1   |=|||||||||||*|||||||||| targets:231   UUCCAAGUUAUUGNGCCCACAUGC   254 Target Full Sequence	1.5	Sequence 4101 from Patent EP2074227	NA	coding protein	psRNATarget