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BaseInfo

ncRNA ID	novel_zma_miR5952
Species	Zea mays
Class	miRNA
Genome position	Chr4:179288423-179288630 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647385
Length	24
Mature sequence(if miRNA)	185 - AAGUCUAUCUCAAAUUUAUGUGGU - 208
Stem-loop(if miRNA)	-G -         A                  G         A                                  C                         U   C CAUAAAUUU AGAUAGACUUAUAUCUGA CUUUGGAAA UGGUGAAAUGUUAAAUUCUAAGUUAAAUAGAUUA UUUAUUAAGUAAAUUUCAAUUCCUC A   | ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   G GUAUUUAAA UCUAUCUGAAUAUAGACU GAAACCUUU GCCACUUUACAGUUUAAGAUUCGAUUUAUCUAAU AAAUAAUUCAUUUAAAGUUAAGGAG A UG U         C                  A         C                                  A                         C
Stem-loop sequence	GCCAUAAAUUUAAGAUAGACUUAUAUCUGAGCUUUGGAAAAUGGUGAAAUGUUAAAUUCUAAGUUAAAUAGAUUACUUUAUUAAGUAAAUUUCAAUUCCUCUAACGAGGAAUUGAAAUUUACUUAAUAAAAUAAUCUAUUUAGCUUAGAAUUUGACAUUUCACCGCUUUCCAAAGAUCAGAUAUAAGUCUAUCUCAAAUUUAUGUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651668.2	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   *||||||=|||||||||||||=|| targets:2016   CCCACAUGAAUUUGAGAUAGAUUU   2039 Target Full Sequence	2.5	PREDICTED: Zea mays GDSL esterase/lipase At4g18970 (LOC103630621), mRNA	NA	coding protein	psRNATarget
XM_020538936.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   |=|*|||||||||||||||||||| targets:587   AUCUCAUAAAUUUGAGAUAGACUU   610 Target Full Sequence	0.0	PREDICTED: Zea mays peptide transporter PTR2 (LOC100281420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551574.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   ||||=||=||||||||||||*||| targets:768   ACCAUAUGAAUUUGAGAUAGUCUU   791 Target Full Sequence	2.5	PREDICTED: Zea mays DNA binding protein (LOC100283369), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020551573.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   ||||=||=||||||||||||*||| targets:457   ACCAUAUGAAUUUGAGAUAGUCUU   480 Target Full Sequence	2.5	PREDICTED: Zea mays DNA binding protein (LOC100283369), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957455.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   |||*=||=|||||||||||||||| targets:939   ACCCUAUGAAUUUGAGAUAGACUU   962 Target Full Sequence	1.0	Zea mays clone 1592915 mRNA sequence	NA	coding protein	psRNATarget
BT068066.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   ||=*|||=|||||||||||||||| targets:611   ACUCCAUGAAUUUGAGAUAGACUU   634 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0037O10 mRNA, complete cds	NA	coding protein	psRNATarget
EU972160.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   ||=*|||=|||||||||||||||| targets:512   ACUUCAUGAAUUUGAGAUAGACUU   535 Target Full Sequence	1.0	Zea mays clone 376628 mRNA sequence	NA	coding protein	psRNATarget
BT084994.2	ncRNA:24   UGG------UGUAUUUAAACUCUAUCUGAA   1   |||------|=|||||||||||=||||||| targets:132   ACCCUAUAAAUAUAAAUUUGAGGUAGACUU   161 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0223G20 mRNA, complete cds	NA	coding protein	psRNATarget
BT063476.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   ==|*|||=||||||||||||=||| targets:1732   GUCCCAUGAAUUUGAGAUAGGCUU   1755 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0067H23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540291.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   |=|*=||=||||||=||||||||| targets:2193   AUCCUAUGAAUUUGGGAUAGACUU   2216 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (pco092239), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675165.2	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   |||*|||=|||||||||||*|||| targets:70   ACCCCAUGAAUUUGAGAUAUACUU   93 Target Full Sequence	2.5	PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001149779.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   |||*|||=||||||||||||*||| targets:84   ACCUCAUGAAUUUGAGAUAGUCUU   107 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275779 (LOC100275779), mRNA	NA	coding protein	psRNATarget
EU958050.1	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   |||*|||=||||||||||||*||| targets:84   ACCUCAUGAAUUUGAGAUAGUCUU   107 Target Full Sequence	2.5	Zea mays clone 1670548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062740.2	ncRNA:24   UGGUGUAUUUAAACUCUAUCUGAA   1   |=|*=||*|||||||||||*|||| targets:973   AUCCUAUCAAUUUGAGAUAAACUU   996 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0340F04 mRNA, complete cds	NA	coding protein	psRNATarget