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BaseInfo

ncRNA ID	novel_zma_miR5950
Species	Zea mays
Class	miRNA
Genome position	Chr3:136527033-136527221 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	21
Mature sequence(if miRNA)	169 - UUUUACCAAAUCGAUUCUUAU - 189
Stem-loop(if miRNA)	--       U    GUAAG       C   --U  G  -GA      -    --A   U  GG      UGCGG     --AA   --AG  --    AUAA   AAGAAUC GGUU     GAGAAUC UCC   GU AA   GAAUAU GAGU   UCG AG  AUUGCA     AGGAA    UUA    GU  GUCC    G   ||||||| ||||     ||||||| |||   || ||   |||||| ||||   ||| ||  ||||||     |||||    |||    ||  ||||   UUCUUAG CUAA     UUUUUGG AGG   UA UU   CUUGUA CUUA   AGC UC  UAACGU     UCCUU    AGU    CA  UAGG    G UA       -    -ACCA       U   CUU  G  AUA      U    ACC   -  AU      UAUCA     AGGC   GAAA  UC    AUUU
Stem-loop sequence	AAGAAUCUGGUUGUAAGGAGAAUCCUCCUGUGAAGAGAAUAUGAGUAUCGUAGGGAUUGCAUGCGGAGGAAAAUUAAGGUGUCCAUAAGGUUUAGGAUCUACAAAGUGACGGAUUCCUACUAUUGCAAUUACUCGACCAAUUCUAUGUUCAUAUUGAUUUCGGAUGGUUUUUACCAAAUCGAUUCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552237.1	ncRNA:21   UAUUCUUAGCUAAACCAUUUU   1   =|=|||||||||||||||||| targets:581   GUGAGAAUCGAUUUGGUAAAA   601 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654145 (LOC103654145), mRNA	NA	coding protein	psRNATarget
EU944861.1	ncRNA:21   UAUUCUUAGCUAAACCAUUUU   1   =|=|||||||||||||||||| targets:572   GUGAGAAUCGAUUUGGUAAAA   592 Target Full Sequence	1.0	Zea mays clone 234128 mRNA sequence	NA	coding protein	psRNATarget
EU951642.1	ncRNA:21   UAUUCUUAGCUAAACCAUUUU   1   =|=|||||||||||||||||| targets:523   GUGAGAAUCGAUUUGGUAAAA   543 Target Full Sequence	1.0	Zea mays clone 986636 mRNA sequence	NA	coding protein	psRNATarget
EU940883.1	ncRNA:21   UAUUCUUAGCUAAACCAUUUU   1   =|=|||||||*|||||||||| targets:1707   GUGAGAAUCGUUUUGGUAAAA   1727 Target Full Sequence	2.5	Zea mays clone 1166186 mRNA sequence	NA	coding protein	psRNATarget