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BaseInfo

ncRNA ID novel_zma_miR5949
Species Zea mays
Class miRNA
Genome position Chr3:136366265-136366373 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 21
Mature sequence(if miRNA) 1 - AGUUUGGAAACCCUAUUUUCC - 21
Stem-loop(if miRNA) --       A           C UAA   U      U   C    -       UA
  AGUUUGG AACCCUAUUUU C   GGG UUUUCA UUU CCAA GGGAAAU  G
  ||||||| ||||||||||| |   ||| |||||| ||| |||| |||||||
  UCAAACC UUGGGAUAAAA G   CCC AAAAGU AAA GGUU CCUUUUA  U
GA       G           A UUA   U      U   A    A       CU
Stem-loop sequence AGUUUGGAAACCCUAUUUUCCUAAGGGUUUUUCAUUUUCCCAAGGGAAAUUAGUUCAUUUUCCAUUGGAAAAUUGAAAAUCCCAUUGAAAAAUAGGGUUGCCAAACUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020544094.1
ncRNA:21   CCUUUU-AUCCCAAAGGUUUGA   1
  ||||||-|||||||||||||||
targets:1302   GGAAAAAUAGGGUUUCCAAACU   1323

2.0 PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA NA coding protein psRNATarget
XM_008652590.2
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=*||||||||||||
targets:969   GGAAAAUGAGGUUUCCAAACU   989

2.5 PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008652589.2
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=*||||||||||||
targets:996   GGAAAAUGAGGUUUCCAAACU   1016

2.5 PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X3, mRNA NA coding protein psRNATarget
BT034002.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=*||||||||||||
targets:1014   GGAAAAUGAGGUUUCCAAACU   1034

2.5 Zea mays full-length cDNA clone ZM_BFc0044B05 mRNA, complete cds NA coding protein psRNATarget
NM_001137218.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=*||||||||||||
targets:1014   GGAAAAUGAGGUUUCCAAACU   1034

2.5 Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), mRNA NA coding protein psRNATarget
XM_008652587.2
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=*||||||||||||
targets:1074   GGAAAAUGAGGUUUCCAAACU   1094

2.5 PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544055.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=||*||||||||||
targets:1885   GGAAAAUGGGAUUUCCAAACU   1905

2.5 PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008662239.2
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=||*||||||||||
targets:1905   GGAAAAUGGGAUUUCCAAACU   1925

2.5 PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA NA coding protein psRNATarget
EU956611.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||=|||||*|||||||
targets:1500   GGAAAAUGGGGUUGCCAAACU   1520

2.5 Zea mays clone 1568093 mRNA sequence NA coding protein psRNATarget
EU951374.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  **|||||=|||||||||||||
targets:411   AAAAAAUGGGGUUUCCAAACU   431

1.0 Zea mays clone 697858 mRNA sequence NA coding protein psRNATarget
EU957224.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  *||||||||*|||||||||||
targets:1967   AGAAAAUAGAGUUUCCAAACU   1987

1.5 Zea mays clone 1586117 DHHC zinc finger domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001154524.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  *||||||||*|||||||||||
targets:1967   AGAAAAUAGAGUUUCCAAACU   1987

1.5 Zea mays DHHC zinc finger domain containing protein (LOC100281605), mRNA NA coding protein psRNATarget
XM_008669712.2
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  *||||||||*|||||||||||
targets:2196   AGAAAAUAGAGUUUCCAAACU   2216

1.5 PREDICTED: Zea mays DHHC zinc finger domain containing protein (LOC100281605), transcript variant X2, mRNA NA coding protein psRNATarget
EU972304.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  *||||||=|||||*|||||||
targets:229   AGAAAAUGGGGUUCCCAAACU   249

2.5 Zea mays clone 379375 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU967323.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||*|||*|||||||||
targets:967   GGAAAAUUGGGGUUCCAAACU   987

2.5 Zea mays clone 301481 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150835.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |||||||*|||*|||||||||
targets:967   GGAAAAUUGGGGUUCCAAACU   987

2.5 Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), mRNA NA coding protein psRNATarget
EZ097636.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  **|||||||||||*|||||||
targets:9   AAAAAAUAGGGUUCCCAAACU   29

1.5 TSA: Zea mays contig33291, mRNA sequence NA coding protein psRNATarget
EU947743.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |*|||||=|||||*|||||||
targets:115   GAAAAAUGGGGUUGCCAAACU   135

2.5 Zea mays clone 356079 mRNA sequence NA coding protein psRNATarget
EU949735.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |*|||||=|||||*|||||||
targets:166   GAAAAAUGGGGUUGCCAAACU   186

2.5 Zea mays clone 442739 mRNA sequence NA coding protein psRNATarget
BT088027.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  |*|||||=|*|||||||||||
targets:690   GAAAAAUGGAGUUUCCAAACU   710

2.5 Zea mays full-length cDNA clone ZM_BFb0366P15 mRNA, complete cds NA coding protein psRNATarget
EU960700.1
ncRNA:19   UUUUAUCCCAAAGGUUUGA   1
  |||||=|||||*|||||||
targets:1   AAAAUGGGGUUGCCAAACU   19

2.5 Zea mays clone 227687 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT088407.1
ncRNA:21   CCUUUUAUCCCAAAGGUUUGA   1
  **|||||=||*||||||||||
targets:1100   AAAAAAUGGGAUUUCCAAACU   1120

2.5 Zea mays full-length cDNA clone ZM_BFc0179M16 mRNA, complete cds NA coding protein psRNATarget
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