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BaseInfo

ncRNA ID	novel_zma_miR5944
Species	Zea mays
Class	miRNA
Genome position	Chr3:113199284-113199486 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647343;SRR2647385
Length	23
Mature sequence(if miRNA)	1 - GAGCUCUUUUCUACUAGUGGAUU - 23
Stem-loop(if miRNA)	--  G                GAUUAAUUA     ----- AA   GUUUCAUCC    C  UCAAAGAAGUGCCAUCAAUUCCCUCUAGCUACACCAUUGUCAUUCUGG   GA CUCUUUUCUACUAGUG         UUAGA     G  GAA         GUAC UU                                                C   || ||||||||||||||||         |||||     |  |||         |||| ||                                                U   CU GAGAAAAGAUGAUCAC         CAGUA     C  CGU         CUUG CU                                                C AU  G                --AAUUAUU     CUAAU --   ---------    G  AGUUACUCUGUUGUUUCAUCAAACGGUAGUGGAUAGAUAAGGAUAAUG
Stem-loop sequence	GAGCUCUUUUCUACUAGUGGAUUAAUUAUUAGAGAAGAAGUUUCAUCCGUACCUUUCAAAGAAGUGCCAUCAAUUCCCUCUAGCUACACCAUUGUCAUUCUGGCUCGUAAUAGGAAUAGAUAGGUGAUGGCAAACUACUUUGUUGUCUCAUUGAUCGGUUCUGCCUAAUCAUGACUUAUUAACACUAGUAGAAAAGAGGUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974548.1	ncRNA:23   UUAGGUGAUCAUCUUUUCUCGAG   1   *|||||||||||||||||||||| targets:1743   CAUCCACUAGUAGAAAAGAGCUC   1765 Target Full Sequence	0.0	Zea mays clone 452478 mRNA sequence	NA	coding protein	psRNATarget
XM_008650877.2	ncRNA:23   UUAGGUGAUCAUCUUUUCUCGAG   1   *|||||||||||||||||||||| targets:1747   CAUCCACUAGUAGAAAAGAGCUC   1769 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103629764 (LOC103629764), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650878.2	ncRNA:23   UUAGGUGAUCAUCUUUUCUCGAG   1   *|||||||||||||||||||||| targets:1750   CAUCCACUAGUAGAAAAGAGCUC   1772 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103629764 (LOC103629764), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU943186.1	ncRNA:23   UUAGGUGAUCAUCUUUUCUCGAG   1   ==||||*|||||||||||||||| targets:1842   GGUCCAAUAGUAGAAAAGAGCUC   1864 Target Full Sequence	1.0	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
EU956212.1	ncRNA:23   UUA---G-GUGAUCAUCUUUUCUCGAG   1   |=|---|-||||||||||||||||||| targets:1152   AGUGUGCACACUAGUAGAAAAGAGCUC   1178 Target Full Sequence	2.0	Zea mays clone 1559110 mRNA sequence	NA	coding protein	psRNATarget
EU944016.1	ncRNA:23   UUAGGUGAUCAUCUUUUCUCGAG   1   ==*|||||||||*|||||||||| targets:583   GGGCCACUAGUACAAAAGAGCUC   605 Target Full Sequence	1.5	Zea mays clone 1703941 mRNA sequence	NA	coding protein	psRNATarget
EU957000.1	ncRNA:23   UUAGGUG--AUCAUCUUUUCUCGAG   1   *=|*|||--|||||||||||||||| targets:2169   UGUGCACAAUAGUAGAAAAGAGCUC   2193 Target Full Sequence	2.5	Zea mays clone 1580022 mRNA sequence	NA	coding protein	psRNATarget
XM_008680698.2	ncRNA:23   UUAGGUGAUCAUCUUUUCUCGAG   1   *=|*|||*=|||||||||||||= targets:2849   UGUGCACCGGUAGAAAAGAGCUU   2871 Target Full Sequence	3.0	PREDICTED: Zea mays U-box domain-containing protein 33 (LOC103653883), mRNA	NA	coding protein	psRNATarget