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BaseInfo

ncRNA ID novel_zma_miR5941
Species Zea mays
Class miRNA
Genome position Chr3:75706879-75706936 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647388
Length 24
Mature sequence(if miRNA) 35 - CUCUAGAAAGUUAUGUAACUUCCU - 58
Stem-loop(if miRNA) --        U      C       ACAU
  GAAGUUAU UAACUU CUAGAGU    G
  |||||||| |||||| |||||||
  CUUCAAUG AUUGAA GAUCUCA    U
UC        U      A       AACA
Stem-loop sequence GAAGUUAUUUAACUUCCUAGAGUACAUGUACAAACUCUAGAAAGUUAUGUAACUUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949881.1
ncRNA:24   UCCUUCAAUGUAUUGAAAGAUCUC   1
  ||||||||||*||||||*||||||
targets:945   AGGAAGUUACUUAACUUCCUAGAG   968

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget
EU949881.1
ncRNA:24   UCCUUCAAUGUAUUGAAAGAUCUC   1
  ||*|||||||*||||||*||||||
targets:905   AGCAAGUUACUUAACUUCCUAGAG   928

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget