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BaseInfo

ncRNA ID	novel_zma_miR5938
Species	Zea mays
Class	miRNA
Genome position	Chr3:1466946-1467047 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647385
Length	24
Mature sequence(if miRNA)	1 - ACCUAUCCUCCUUUUUGUGAGGGG - 24
Stem-loop(if miRNA)	--             U       C             CCACCAG     GU   CCUCACAAAAAGG GGAUAGG CCCACCUGCAGGU       AUAAC  U   ||||||||||||| ||||||| |||||||||||||       |||||   GGAGUGUUUUUCC CCUAUCC GGGUGGGCGUCCA       UGUUG  U GG             U       A             UUUAUUA     AU
Stem-loop sequence	CCUCACAAAAAGGUGGAUAGGCCCCACCUGCAGGUCCACCAGAUAACGUUUUAGUUGUAUUAUUUACCUGCGGGUGGGACCUAUCCUCCUUUUUGUGAGGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
X55314.1	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   ||||||||||||||||||||||** targets:923   CCCCUCACAAAAAGGAGGAUAGAC   946 Target Full Sequence	2.5	Zea mays A2 gene	NA	coding protein	psRNATarget
JB163679.1	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   |||||||||||||*|||||||||* targets:21   CCCCUCACAAAAAUGAGGAUAGGC   44 Target Full Sequence	2.5	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
HI403218.1	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   |||||||||||||*|||||||||* targets:21   CCCCUCACAAAAAUGAGGAUAGGC   44 Target Full Sequence	2.5	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235348.1	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   |||||||||||||*|||||||||* targets:21   CCCCUCACAAAAAUGAGGAUAGGC   44 Target Full Sequence	2.5	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   |||||||||||||*|||||||||* targets:36   CCCCUCACAAAAAUGAGGAUAGGC   59 Target Full Sequence	2.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   |||||||||||||*|||||||||* targets:153   CCCCUCACAAAAAUGAGGAUAGGC   176 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
JB166522.1	ncRNA:19   GUGUUUUUCCUCCUAUCCA   1   |||||||||||||||||** targets:1   CACAAAAAGGAGGAUAGAC   19 Target Full Sequence	2.5	Sequence 4186 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238191.1	ncRNA:19   GUGUUUUUCCUCCUAUCCA   1   |||||||||||||||||** targets:1   CACAAAAAGGAGGAUAGAC   19 Target Full Sequence	2.5	Sequence 4186 from Patent EP2985353	NA	coding protein	psRNATarget
HI406061.1	ncRNA:19   GUGUUUUUCCUCCUAUCCA   1   |||||||||||||||||** targets:1   CACAAAAAGGAGGAUAGAC   19 Target Full Sequence	2.5	Sequence 4186 from Patent EP2074227	NA	coding protein	psRNATarget
BT055583.1	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   *=|**||||==||||||||||||* targets:926   GUCAGCACAGGAAGGAGGAUAGGA   949 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:24   GGGGAGUGUUUUUCCUCCUAUCCA   1   *=|**||||==||||||||||||* targets:926   GUCAGCACAGGAAGGAGGAUAGGA   949 Target Full Sequence	3.0	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget