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BaseInfo

ncRNA ID	novel_zma_miR5937
Species	Zea mays
Class	miRNA
Genome position	Chr6:130507508-130507617 [-]
Reference genome	RefGen_v4
Source	SRR1618883;SRR4237222
Length	24
Mature sequence(if miRNA)	87 - UUCUGAGAAUCUGGCUGUGAGGAG - 110
Stem-loop(if miRNA)	--    G   A    -   --     ---GAGA    --GG     G GAGAA     GU   UUCU AGA UCUG GCU  GUGAG       AUCU    CUGCA G     UCUGA  A   |||| ||| |||| |||  |||||       ||||    ||||| |     |||||   AAGA UCU GGAC CGG  UACUU       UAGA    GGCGU C     GGAUU  U GA    -   A    U   GA     AUAGAAA    AAGA     G -AGUA     AU
Stem-loop sequence	UUCUGAGAAUCUGGCUGUGAGGAGAAUCUGGCUGCAGGGAGAAUCUGAGUAUUAUUAGGAUGACGUGCGGAGAAAGAUAAAGAUAUUCAUAGGGCUCAGGAUCUAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU963449.1	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||||*||||||||||||||||||| targets:728   CUCCCCACAGCCAGAUUCUCAGAA   751 Target Full Sequence	0.0	Zea mays clone 262668 mRNA sequence	NA	coding protein	psRNATarget
XM_020545993.1	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||||*||||||||||||||||||| targets:196   CUCCCCACAGCCAGAUUCUCAGAA   219 Target Full Sequence	0.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008664880.2	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||||*||||||||||||||||||| targets:446   CUCCCCACAGCCAGAUUCUCAGAA   469 Target Full Sequence	0.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664881.2	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||||*||||||||||||||||||| targets:450   CUCCCCACAGCCAGAUUCUCAGAA   473 Target Full Sequence	0.0	PREDICTED: Zea mays short-chain dehydrogenase TIC 32, chloroplastic (LOC103641540), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008677133.2	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||||*||||||||||||=|||||| targets:2305   CUCCCCACAGCCAGAUUUUCAGAA   2328 Target Full Sequence	1.5	PREDICTED: Zea mays phosphoglucomutase, chloroplastic (LOC103651489), mRNA	NA	coding protein	psRNATarget
BT087362.1	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||=|*||||||||||||=|||||| targets:1204   CUUCCCACAGCCAGAUUUUCAGAA   1227 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0054C12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177007.2	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||=|*||||||||||||=|||||| targets:2431   CUUCCCACAGCCAGAUUUUCAGAA   2454 Target Full Sequence	1.5	Zea mays calcium dependent protein kinase4 (IDP2562), mRNA	NA	coding protein	psRNATarget
FJ805744.1	ncRNA:24   GAGGAGUGUCGGUCUAAGAGUCUU   1   ||=|*||||||||||||=|||||| targets:2431   CUUCCCACAGCCAGAUUUUCAGAA   2454 Target Full Sequence	1.5	Zea mays CDPK protein (CK1) mRNA, complete cds	NA	coding protein	psRNATarget