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BaseInfo

ncRNA ID novel_zma_miR5935
Species Zea mays
Class miRNA
Genome position Chr3:14541183-14541246 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - CGGUCCGCGACCUGAUGCAGGAGC - 24
Stem-loop(if miRNA) --    UG      -       G     U G A
  UCUU  GUCAGG CGCGGAC GUCCG G C C
  ||||  |||||| ||||||| ||||| | |
  AGGA  UAGUCC GCGCCUG CAGGC C G A
CG    CG      A       G     - G G
Stem-loop sequence UCUUUGGUCAGGCGCGGACGGUCCGUGGCACAGGGCCGGACGGUCCGCGACCUGAUGCAGGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ064356.1
ncRNA:24   CGAGGACGUAGUCCAGCGCCUGGC   1
  *|*=||||*|||*|||||||||||
targets:345   CCGUCUGCCUCAUGUCGCGGACCG   368

2.5 TSA: Zea mays contig65480, mRNA sequence NA coding protein psRNATarget