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BaseInfo

ncRNA ID	novel_zma_miR5934
Species	Zea mays
Class	miRNA
Genome position	Chr3:387557-387669 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	90 - ACCGUCCGCGCCUGAUCAGAGAGC - 113
Stem-loop(if miRNA)	--  -   CAC    U       C       -    ACCA   A  ACCGCCGCCUCGCG   UC CUG   CAGG CGCGGAC GUCCGCG UCUG    GAG GC              C   || |||   |||| ||||||| ||||||| ||||    ||| ||   AG GAC   GUCC GCGCCUG CAGGCGC AGAC    CGG CC              C CG  A   -UA    -       C       C    --CC   -  UGCCAGGCGCUGGA
Stem-loop sequence	UCCUGCACCAGGUCGCGGACCGUCCGCGUCUGACCAGAGAGCACCGCCGCCUCGCGCCAGGUCGCGGACCGUCCGGCCCCAGACCGCGGACCGUCCGCGCCUGAUCAGAGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061906.1	ncRNA:24   CGAGAGACUAGUCCGCGCCUGCCA   1   ||||||||=||||||||||||||| targets:178   GCUCUCUGGUCAGGCGCGGACGGU   201 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CGAGAGACUAGUCCGCGCCUGCCA   1   ||||||||=||||||||||||||| targets:615   GCUCUCUGGUCAGGCGCGGACGGU   638 Target Full Sequence	1.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CGAGAGACUAGUCCGCGCCUGCCA   1   ||||||||=||||*|||||||||| targets:686   GCUCUCUGGUCAGACGCGGACGGU   709 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CGAGAGACUAGUCCGCGCCUGCCA   1   ||||||||=||||||||||||||| targets:650   GCUCUCUGGUCAGGCGCGGACGGU   673 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CGAGAGACUAGUCCGCGCCUGCCA   1   ||||||||=||||||||||||||| targets:1668   GCUCUCUGGUCAGGCGCGGACGGU   1691 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CGAGAGACUAGUCCGCGCCUGCCA   1   ||||||||=||||||||||||||| targets:1668   GCUCUCUGGUCAGGCGCGGACGGU   1691 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   CGAGAGACUAGUCCGCGCCUGCCA   1   ||||||||=|||||=||||||||| targets:11   GCUCUCUGGUCAGGUGCGGACGGU   34 Target Full Sequence	2.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget