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BaseInfo

ncRNA ID	novel_zma_miR5933
Species	Zea mays
Class	miRNA
Genome position	Chr3:52500912-52500987 [-]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	53 - GGUUAAGUGGUCUGAGUAGCACUC - 76
Stem-loop(if miRNA)	GGUUAA          --UA    U  U    UUCU   C       GUGGUCUGAG    GCAC CC UAGG    GAG U       ||||||||||    |||| || ||||    ||| C       UAUCGGAUUU    UGUG GG AUCC    CUC A AAUUAG          UAAG    -  U    ----   U
Stem-loop sequence	GGUUAAGUGGUCUGAGUAGCACUCCUUAGGUUCUGAGCUCAUCUCCCUAUGGGUGUGAAUUUUAGGCUAUGAUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068085.2	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||||||=| targets:40   GAGUGCUACUCAGACCACUUAAUC   63 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0044C23 mRNA, complete cds	NA	coding protein	psRNATarget
BT087922.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||*||||| targets:67   GAGUGCUACUCAGACCACCUAACC   90 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0309F17 mRNA, complete cds	NA	coding protein	psRNATarget
EU968143.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||*||||| targets:282   GAGUGCUACUCAGACCACCUAACC   305 Target Full Sequence	1.5	Zea mays clone 315363 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU955688.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||*||||| targets:1235   GAGUGCUACUCAGACCACAUAACC   1258 Target Full Sequence	1.5	Zea mays clone 1542479 mRNA sequence	NA	coding protein	psRNATarget
BT069231.2	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||*||||| targets:795   GAGUGCUACUCAGACCACCUAACC   818 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
BT042256.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||*||||| targets:436   GAGUGCUACUCAGACCACCUAACC   459 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
BT060590.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||*||||| targets:1025   GAGUGCUACUCAGACCACCUAACC   1048 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0019K01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165693.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||||||||||*||||| targets:1025   GAGUGCUACUCAGACCACCUAACC   1048 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304248 (LOC100304248), mRNA	NA	coding protein	psRNATarget
NM_001174891.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   *|||||||||||||||||*||||| targets:763   AAGUGCUACUCAGACCACCUAACC   786 Target Full Sequence	1.5	Zea mays arginine/serine-rich splicing factor RS2Z37A transcript I (RS2Z37A), mRNA	NA	coding protein	psRNATarget
BT063269.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   *|||||||||||||||||*||||| targets:763   AAGUGCUACUCAGACCACCUAACC   786 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0045K17 mRNA, complete cds	NA	coding protein	psRNATarget
KC424999.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   *|||||||||||||||||*||||| targets:768   AAGUGCUACUCAGACCACCUAACC   791 Target Full Sequence	1.5	Zea mays arginine/serine-rich splicing factor RS2Z37A transcript III (RS2Z37A) mRNA, RS2Z37AIII allele, complete cds, alternatively spliced	NA	coding protein	psRNATarget
EU975161.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   *|||||||||||||||||*||||= targets:133   UAGUGCUACUCAGACCACCUAACU   156 Target Full Sequence	2.5	Zea mays clone 482991 mRNA sequence	NA	coding protein	psRNATarget
EU948993.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||||||||||*|||||||*||||| targets:258   GAGUGCUACUGAGACCACCUAACC   281 Target Full Sequence	2.5	Zea mays clone 393064 mRNA sequence	NA	coding protein	psRNATarget
AY110224.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   |||*||||||||||||||*||||| targets:181   GAGGGCUACUCAGACCACCUAACC   204 Target Full Sequence	1.5	Zea mays CL5837_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020539261.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   ||*|||||||||||||||*||||| targets:454   GAAUGCUACUCAGACCACCUAACC   477 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103629447 (LOC103629447), mRNA	NA	coding protein	psRNATarget
XM_020552812.1	ncRNA:24   CUCACGAUGAGUCUGGUGAAUUGG   1   *|||||||||*|||||||*||||| targets:1559   CAGUGCUACUAAGACCACCUAACC   1582 Target Full Sequence	2.5	PREDICTED: Zea mays nucleolin (LOC103654496), transcript variant X2, mRNA	NA	coding protein	psRNATarget