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BaseInfo

ncRNA ID novel_zma_miR5931
Species Zea mays
Class miRNA
Genome position Chr1:150366558-150366610 [+]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 1 - CGCACUCGGUAAAGUUAGGCUCUU - 24
Stem-loop(if miRNA) ---C             UU      UU G
    GCACUCGGUAAAG  AGGCUC  G C
    |||||||||||||  ||||||  |
    CGUGAGCUAUUUC  UCCGAG  C A
AGGU             --      -- A
Stem-loop sequence CGCACUCGGUAAAGUUAGGCUCUUGGCAACGAGCCUCUUUAUCGAGUGCUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405862.1
ncRNA:24   UUCUCGGAUUGAAAUGGCUCACGC   1
  =|||*|||||||||=|||||||||
targets:158   GAGAUCCUAACUUUGCCGAGUGCG   181

1.5 Sequence 3987 from Patent EP2074227 NA coding protein psRNATarget
LQ237992.1
ncRNA:24   UUCUCGGAUUGAAAUGGCUCACGC   1
  =|||*|||||||||=|||||||||
targets:158   GAGAUCCUAACUUUGCCGAGUGCG   181

1.5 Sequence 3987 from Patent EP2985353 NA coding protein psRNATarget
JB166323.1
ncRNA:24   UUCUCGGAUUGAAAUGGCUCACGC   1
  =|||*|||||||||=|||||||||
targets:158   GAGAUCCUAACUUUGCCGAGUGCG   181

1.5 Sequence 3987 from Patent EP2559767 NA coding protein psRNATarget