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BaseInfo

ncRNA ID	novel_zma_miR5929
Species	Zea mays
Class	miRNA
Genome position	Chr3:169426952-169427006 [-]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - AAGCUGCUGCGGACUGCCAAACGU - 24
Stem-loop(if miRNA)	--    C   -U    --       C      GUUU GGC  UCUG  GCAGCUU UGGC   |||| |||  ||||  ||||||| |||C   CAAA CCG  AGGC  CGUCGAA ACCA UG    -   UC    GU       A
Stem-loop sequence	GUUUCGGCUUCUGGCAGCUUCUGGCCACCAAAAGCUGCUGCGGACUGCCAAACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ111561.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||||||||||||||||||| targets:147   GCGUUUGGCAGUCCGCAGCAGCUU   170 Target Full Sequence	0.0	TSA: Zea mays contig47222, mRNA sequence	NA	coding protein	psRNATarget
EZ054166.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||||||||||||||||||| targets:268   GCGUUUGGCAGUCCGCAGCAGCUU   291 Target Full Sequence	0.0	TSA: Zea mays contig55288, mRNA sequence	NA	coding protein	psRNATarget
EU947367.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||||||||||||||||||| targets:244   GCGUUUGGCAGUCCGCAGCAGCUU   267 Target Full Sequence	0.0	Zea mays clone 341166 mRNA sequence	NA	coding protein	psRNATarget
BT061642.2	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   |=|||||||||||||||||||||| targets:1850   AUGUUUGGCAGUCCGCAGCAGCUU   1873 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0168K13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657517.2	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||||||||||||||||||| targets:2538   GCGUUUGGCAGUCCGCAGCAGCUU   2561 Target Full Sequence	0.0	PREDICTED: Zea mays Protein translocase subunit SECA2 chloroplastic (LOC103634940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537643.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||||||||||||||||=|| targets:848   GCGUUUGGCAGUCCGCAGCAGUUU   871 Target Full Sequence	1.5	PREDICTED: Zea mays 50S ribosomal protein L28, chloroplastic-like (LOC109939456), mRNA	NA	coding protein	psRNATarget
EU961827.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||||||||=|||||||||| targets:1377   GCGUUUGGCAGUCUGCAGCAGCUU   1400 Target Full Sequence	1.5	Zea mays clone 238443 peptidase M48, Ste24p mRNA, complete cds	NA	coding protein	psRNATarget
EU973347.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   ==||||||||||||||||=||||| targets:39   GUGUUUGGCAGUCCGCAGUAGCUU   62 Target Full Sequence	1.5	Zea mays clone 397172 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
EU951194.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   |=|||||*|||||||||||||||| targets:297   AUGUUUGACAGUCCGCAGCAGCUU   320 Target Full Sequence	1.0	Zea mays clone 689005 mRNA sequence	NA	coding protein	psRNATarget
BT019104.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||*|||||||||||||||| targets:757   GCGUUUGACAGUCCGCAGCAGCUU   780 Target Full Sequence	1.0	Zea mays clone Contig706.F mRNA sequence	NA	coding protein	psRNATarget
BT018867.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||*|||||||||||||||| targets:1582   GCGUUUGACAGUCCGCAGCAGCUU   1605 Target Full Sequence	1.0	Zea mays clone EL01N0561F02.d mRNA sequence	NA	coding protein	psRNATarget
BT042815.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   |=|||||*|||||||||||||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0045N18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148703.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   |=|||||*|||||||||||||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	1.0	Zea mays General transcription factor IIH subunit 2 (LOC100274342), mRNA	NA	coding protein	psRNATarget
BT018147.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||||=||||*||||||||| targets:178   GCGUUUGGCGGUCCACAGCAGCUU   201 Target Full Sequence	2.5	Zea mays clone EL01N0555D10.c mRNA sequence	NA	coding protein	psRNATarget
EU945617.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   ==|||||||||||||||||*|||| targets:896   GUGUUUGGCAGUCCGCAGCCGCUU   919 Target Full Sequence	1.5	Zea mays clone 279548 mRNA sequence	NA	coding protein	psRNATarget
BT061432.1	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   =||||||*|||||=|||||||||| targets:1157   GCGUUUGACAGUCUGCAGCAGCUU   1180 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0145K17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658744.2	ncRNA:24   UGCAAACCGUCAGGCGUCGUCGAA   1   **|**|||=||||||||||||||* targets:3580   UGGGAUGGUAGUCCGCAGCAGCUC   3603 Target Full Sequence	2.0	PREDICTED: Zea mays lysine-specific demethylase JMJ705 (LOC103636385), mRNA	NA	coding protein	psRNATarget