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BaseInfo

ncRNA ID	novel_zma_miR5923
Species	Zea mays
Class	miRNA
Genome position	Chr3:22547552-22547646 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647386;SRR2647388;SRR2647389;SRR2647390;SRR2647467
Length	24
Mature sequence(if miRNA)	72 - AUCUCAUUCAAUCCAUGUAUAAUG - 95
Stem-loop(if miRNA)	--AUC     A                 -----------U        A  CU      UAUAU GAUUGAAUGAGAUUAGG            GGGUUUAA UU  A      ||||| |||||||||||||||||            |||||||| ||      AUGUA CUAACUUACUCUAAUUU            UUCAAAUU AA  A GUAAU     C                 UUUAAAUUCUUU        G  UA
Stem-loop sequence	AUCUAUAUAGAUUGAAUGAGAUUAGGUGGGUUUAAAUUCUAAAUAAGUUAAACUUUUUCUUAAAUUUUUUAAUCUCAUUCAAUCCAUGUAUAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018903.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*||*||||||||||||||=||| targets:1961   CAAUACACAUGGAUUGAAUGGGAU   1984 Target Full Sequence	2.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
NM_001157801.2	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   =|*||*|||||||||||||||||| targets:1767   UAAUACACAUGGAUUGAAUGAGAU   1790 Target Full Sequence	1.0	Zea mays Flavonoid 3-monooxygenase (LOC100273153), mRNA	NA	coding protein	psRNATarget
BT040331.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   =|*||*|||||||||||||||||| targets:1730   UAAUACACAUGGAUUGAAUGAGAU   1753 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0083E04 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*||*||||||||||=||||||| targets:21   CAAUACACAUGGAUUGGAUGAGAU   44 Target Full Sequence	2.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*||*||||||||||=||||||| targets:21   CAAUACACAUGGAUUGGAUGAGAU   44 Target Full Sequence	2.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*||*||||||||||=||||||| targets:21   CAAUACACAUGGAUUGGAUGAGAU   44 Target Full Sequence	2.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020540502.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ==|||**||||||||||||||||| targets:1575   UGUUACCCAUGGAUUGAAUGAGAU   1598 Target Full Sequence	2.0	PREDICTED: Zea mays glutamine synthetase 2 (gln2), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY104270.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ==|||**||||||||||||||||| targets:1467   UGUUACCCAUGGAUUGAAUGAGAU   1490 Target Full Sequence	2.0	Zea mays PCO127708 mRNA sequence	NA	coding protein	psRNATarget
NM_001111973.2	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ==|||**||||||||||||||||| targets:1480   UGUUACCCAUGGAUUGAAUGAGAU   1503 Target Full Sequence	2.0	Zea mays glutamine synthetase 2 (gln2), transcript variant 1, mRNA	NA	coding protein	psRNATarget
NM_001305868.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ==|||**||||||||||||||||| targets:1462   UGUUACCCAUGGAUUGAAUGAGAU   1485 Target Full Sequence	2.0	Zea mays glutamine synthetase 2 (gln2), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT033690.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ==|||**||||||||||||||||| targets:1453   UGUUACCCAUGGAUUGAAUGAGAU   1476 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0117H10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658927.2	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*|=*||||||||||=||||||| targets:233   CAAUGCACAUGGAUUGGAUGAGAU   256 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA	NA	coding protein	psRNATarget
NM_001254782.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ==|||**||||||||||||||||| targets:626   UGUUACCCAUGGAUUGAAUGAGAU   649 Target Full Sequence	2.0	Zea mays glutamine synthetase 2 (LOC100856889), mRNA	NA	coding protein	psRNATarget
BT040340.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ==|||**||||||||||||||||| targets:626   UGUUACCCAUGGAUUGAAUGAGAU   649 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0084E21 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*||*||||||||||||||*||| targets:30   CAGUACACAUGGAUUGAAUGUGAU   53 Target Full Sequence	2.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*||*||||||||||||||*||| targets:30   CAGUACACAUGGAUUGAAUGUGAU   53 Target Full Sequence	2.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   GUAAUAUGUACCUAACUUACUCUA   1   ||*||*||||||||||||||*||| targets:30   CAGUACACAUGGAUUGAAUGUGAU   53 Target Full Sequence	2.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget