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BaseInfo

ncRNA ID novel_zma_miR5921
Species Zea mays
Class miRNA
Genome position Chr3:231681561-231681672 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647389;SRR2647390;SRR2647391
Length 24
Mature sequence(if miRNA) 1 - AGAUUUAUUUUACUAUUGGUAUUU - 24
Stem-loop(if miRNA) --   U  A        UU   -   UUAU     U  -AU AA    U       GC
  AGA UU UUUUACUA  GGU AUU    UGGGU GA   C  GGUA UGCUUGG  A
  ||| || ||||||||  ||| |||    ||||| ||   |  |||| |||||||
  UCU AA AGAAUGAU  CCA UGG    ACCCA CU   G  UUAU ACGAGCC  A
AC   U  C        --   G   UCUU     C  CCU GG    U       GG
Stem-loop sequence AGAUUUAUUUUACUAUUGGUAUUUUAUUGGGUUGAAUCAAGGUAUUGCUUGGGCAAGGCCGAGCAUUAUUGGGUCCUCCACCCAUUCUGGUGACCUAGUAAGACAAUUCUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008673740.2
ncRNA:24   UUUAUGGUUAUCAUUUUAUUUAGA   1
  =|||||=|*|=|||||||||||||
targets:1351   GAAUACUAUUGGUAAAAUAAAUCU   1374

3.0 PREDICTED: Zea mays probable 3-hydroxyisobutyryl-CoA hydrolase 3 (LOC103649476), mRNA NA coding protein psRNATarget